TBLASTN 2.2.30+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: /export/cursos/20428/BI/genomes/2016/Miichthys_miiuy/genome.fa 6,294 sequences; 619,300,777 total letters Query= SPP00000613_2.0DIO3b # Protein # Iodothyronine deiodinase 3b (DIO3b) # Zebrafish Length=254 Score E Sequences producing significant alignments: (Bits) Value JXSJ01000021.1 Miichthys miiuy scaffold21, whole genome shotgun... 344 1e-105 JXSJ01000029.1 Miichthys miiuy scaffold29, whole genome shotgun... 320 2e-97 JXSJ01000082.1 Miichthys miiuy scaffold82, whole genome shotgun... 142 4e-36 JXSJ01000014.1 Miichthys miiuy scaffold14, whole genome shotgun... 73.9 2e-13 > JXSJ01000021.1 Miichthys miiuy scaffold21, whole genome shotgun sequence Length=4019889 Score = 344 bits (882), Expect = 1e-105, Method: Compositional matrix adjust. Identities = 158/254 (62%), Positives = 210/254 (83%), Gaps = 6/254 (2%) Frame = -2 Query 1 RALKNALVCLLILPRFLVAAFMLWCLDFLCVRKRVLVHLQeraeeeeedaeeeeePLCIS 60 +A+K A+VCL++LPRFL+AA M W LDFLC+RKRV ++E+ + + PLCIS Sbjct 1253576 KAIKTAIVCLVLLPRFLMAAVMFWLLDFLCIRKRVFFRMKEQEGDAIDP------PLCIS 1253415 Query 61 DSSRMFSWESLKAVFHGHKLDYMKSARLGHAAPDSEVFPLAEPRRGRVLEFARGHRPLVL 120 DS+R+FS ESLKAV+HGHKLD++K+A LGH AP++EV L + RR R+L++A+ RPL+L Sbjct 1253414 DSNRLFSLESLKAVWHGHKLDFLKAAHLGHGAPNTEVVQLEDQRRSRILDYAKDKRPLIL 1253235 Query 121 SFGSCSXPPFMRRLKAFRRLVLRYADVADALLIYIEEAHPSDGWRSSDAPHQIRRHRSLE 180 +FGSC+ PPFM RLKAF+ +V + AD+AD++++YIEEAHPSDGW S+DAP+QI +HR LE Sbjct 1253234 NFGSCT*PPFMARLKAFQGVVQQNADIADSVVVYIEEAHPSDGWMSTDAPYQIPKHRCLE 1253055 Query 181 ERLSAARLMEREAPGCAVVADGMENAANSAYGAYFDRLYIVQDGRVVYQGGRGPEGFRIS 240 +RL+AA+LM E PGC VV D MEN++N+AYGAYFDRLYI+Q+G++VYQGGRGPEG+RI+ Sbjct 1253054 DRLNAAQLMHLEVPGCLVVVDSMENSSNAAYGAYFDRLYILQEGKIVYQGGRGPEGYRIT 1252875 Query 241 ELRHWLDRYRERLR 254 ELR WLD+YRERL Sbjct 1252874 ELRDWLDQYRERLE 1252833 > JXSJ01000029.1 Miichthys miiuy scaffold29, whole genome shotgun sequence Length=3578529 Score = 320 bits (820), Expect = 2e-97, Method: Compositional matrix adjust. Identities = 154/253 (61%), Positives = 204/253 (81%), Gaps = 6/253 (2%) Frame = +2 Query 1 RALKNALVCLLILPRFLVAAFMLWCLDFLCVRKRVLVHLQeraeeeeedaeeeeePLCIS 60 RALK+A +CL++LPRFL+AA MLW LDFLC+RK+VL+ + E ++ P+C+S Sbjct 1651964 RALKHAALCLMLLPRFLLAAVMLWLLDFLCIRKKVLLKM------GERQDSPDDPPVCVS 1652125 Query 61 DSSRMFSWESLKAVFHGHKLDYMKSARLGHAAPDSEVFPLAEPRRGRVLEFARGHRPLVL 120 DS++MF+ ESL+AV++G KLD++KSA LG AAP++EV + + R+ R+L+ +G RPL+L Sbjct 1652126 DSNKMFTLESLRAVWYGQKLDFLKSAHLGRAAPNTEVMLVQDRRQVRILDCMKGKRPLIL 1652305 Query 121 SFGSCSXPPFMRRLKAFRRLVLRYADVADALLIYIEEAHPSDGWRSSDAPHQIRRHRSLE 180 +FGSCS PPFM RL AF R+V +YAD+AD L++YIEEAHPSDGW SSDAP+QI +HR LE Sbjct 1652306 NFGSCS*PPFMTRLAAFHRVVSQYADIADFLVVYIEEAHPSDGWVSSDAPYQIPKHRCLE 1652485 Query 181 ERLSAARLMEREAPGCAVVADGMENAANSAYGAYFDRLYIVQDGRVVYQGGRGPEGFRIS 240 +RL AA+LM E PG VV D M+N++N+AYGAYF+RLYIV+D RVVYQGGRGPEG+RIS Sbjct 1652486 DRLRAAQLMLTEVPGTNVVVDNMDNSSNAAYGAYFERLYIVRDERVVYQGGRGPEGYRIS 1652665 Query 241 ELRHWLDRYRERL 253 ELR+WL++YR L Sbjct 1652666 ELRNWLEQYRNDL 1652704 > JXSJ01000082.1 Miichthys miiuy scaffold82, whole genome shotgun sequence Length=1380955 Score = 142 bits (359), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 76/163 (47%), Positives = 109/163 (67%), Gaps = 9/163 (6%) Frame = +2 Query 95 SEVFPLAEPRRG---RVLEFARGHRPLVLSFGSCSXPPFMRRLKAFRRLVLRYADVADAL 151 + V P A+ R G R+L+F RPLV++FGS + PPF+ L AFR+LV ++DVAD L Sbjct 1148216 TNVPPGAKIRNGDECRLLDFESSDRPLVVNFGSAT*PPFISHLPAFRQLVEDFSDVADFL 1148395 Query 152 LIYIEEAHPSDGWRS---SDAPHQIRRHRSLEERLSAA-RLMEREA--PGCAVVADGMEN 205 L+YI+EAHPSDGW + +R+H+SLEERL AA +L+E + P C +VAD M+N Sbjct 1148396 LVYIDEAHPSDGWVAPPMGQCSFNVRKHQSLEERLGAAQKLIEHFSLPPQCQLVADCMDN 1148575 Query 206 AANSAYGAYFDRLYIVQDGRVVYQGGRGPEGFRISELRHWLDR 248 AN AYG +R+ IVQ ++ Y GG+GP + + ++R WL++ Sbjct 1148576 NANVAYGVSNERVCIVQQRKIAYLGGKGPFFYNLKDVRQWLEQ 1148704 > JXSJ01000014.1 Miichthys miiuy scaffold14, whole genome shotgun sequence Length=5141783 Score = 73.9 bits (180), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 36/79 (46%), Positives = 55/79 (70%), Gaps = 1/79 (1%) Frame = +1 Query 151 LLIYIEEAHPSDGWRSSDAPHQIRRHRSLEERLSAARLMEREAPGCAVVADGMENAANSA 210 +++Y+ SDGW ++ I +HR+LEERLSAA+++ ++ P C VV D M+NAA Sbjct 2398021 VILYLFLIFASDGWAFTNN-FDINQHRNLEERLSAAQILVQKEPLCPVVVDEMKNAAAIK 2398197 Query 211 YGAYFDRLYIVQDGRVVYQ 229 YGA +RLY++Q G+VVY+ Sbjct 2398198 YGALPERLYVLQAGKVVYK 2398254 Score = 70.5 bits (171), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 31/52 (60%), Positives = 41/52 (79%), Gaps = 0/52 (0%) Frame = +1 Query 114 GHRPLVLSFGSCSXPPFMRRLKAFRRLVLRYADVADALLIYIEEAHPSDGWR 165 G+RPLVLSFGSC+ PPFM +L+ F++LV + DVAD L+IYI EAH + W+ Sbjct 2397355 GNRPLVLSFGSCT*PPFMFKLEEFKQLVKDFRDVADFLVIYIAEAHSTGEWK 2397510 Lambda K H a alpha 0.328 0.141 0.446 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 27973962400 Database: /export/cursos/20428/BI/genomes/2016/Miichthys_miiuy/genome.fa Posted date: Oct 21, 2016 4:44 PM Number of letters in database: 619,300,777 Number of sequences in database: 6,294 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 13 Window for multiple hits: 40