TBLASTN 2.2.30+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: /export/cursos/20428/BI/genomes/2016/Miichthys_miiuy/genome.fa 6,294 sequences; 619,300,777 total letters Query= SPP00000612_2.0DIO3a # Protein # Iodothyronine deiodinase 3a (DIO3a) # Zebrafish Length=265 Score E Sequences producing significant alignments: (Bits) Value JXSJ01000029.1 Miichthys miiuy scaffold29, whole genome shotgun... 348 5e-107 JXSJ01000021.1 Miichthys miiuy scaffold21, whole genome shotgun... 315 2e-95 JXSJ01000082.1 Miichthys miiuy scaffold82, whole genome shotgun... 131 4e-32 JXSJ01000014.1 Miichthys miiuy scaffold14, whole genome shotgun... 65.9 1e-10 > JXSJ01000029.1 Miichthys miiuy scaffold29, whole genome shotgun sequence Length=3578529 Score = 348 bits (894), Expect = 5e-107, Method: Compositional matrix adjust. Identities = 199/267 (75%), Positives = 221/267 (83%), Gaps = 5/267 (2%) Frame = +2 Query 1 GMEMLQGSAGVQ--SALKNAAVCVlllprfllaalmlclldflcIRRKLLLKMQEGAFSS 58 G EM S GVQ ALK+AA+C++LLPRFLLAA+ML LLDFLCIR+K+LLKM E S Sbjct 1651922 GEEMTHDSGGVQMARALKHAALCLMLLPRFLLAAVMLWLLDFLCIRKKVLLKMGERQ-DS 1652098 Query 59 PDDPPLRVSDSNKMFTLESLRAVWYGQKLDFFKSARLGGAAPNTEVFPLDGDARAAERIL 118 PDDPP+ VSDSNKMFTLESLRAVWYGQKLDF KSA LG AAPNTEV L D R RIL Sbjct 1652099 PDDPPVCVSDSNKMFTLESLRAVWYGQKLDFLKSAHLGRAAPNTEVM-LVQDRRQV-RIL 1652272 Query 119 DYARGRRPLILNFGSCSXPPFMTRLSAFQRVARQYADIADSLLVYIEEAHPSDGWVSSDA 178 D +G+RPLILNFGSCS PPFMTRL+AF RV QYADIAD L+VYIEEAHPSDGWVSSDA Sbjct 1652273 DCMKGKRPLILNFGSCS*PPFMTRLAAFHRVVSQYADIADFLVVYIEEAHPSDGWVSSDA 1652452 Query 179 PVQIPRHRCLEDRLRAAQMLHREAAGSAVVVDSMQNSCNAAYGAYFERLYIVKDATVVYQ 238 P QIP+HRCLEDRLRAAQ++ E G+ VVVD+M NS NAAYGAYFERLYIV+D VVYQ Sbjct 1652453 PYQIPKHRCLEDRLRAAQLMLTEVPGTNVVVDNMDNSSNAAYGAYFERLYIVRDERVVYQ 1652632 Query 239 GGRGPEGYRIAELRDWLERYRSGLQES 265 GGRGPEGYRI+ELR+WLE+YR+ L S Sbjct 1652633 GGRGPEGYRISELRNWLEQYRNDLMNS 1652713 > JXSJ01000021.1 Miichthys miiuy scaffold21, whole genome shotgun sequence Length=4019889 Score = 315 bits (808), Expect = 2e-95, Method: Compositional matrix adjust. Identities = 166/253 (66%), Positives = 206/253 (81%), Gaps = 3/253 (1%) Frame = -2 Query 13 SALKNAAVCVlllprfllaalmlclldflcIRRKLLLKMQEGAFSSPDDPPLRVSDSNKM 72 A+K A VC++LLPRFL+AA+M LLDFLCIR+++ +M+E DPPL +SDSN++ Sbjct 1253576 KAIKTAIVCLVLLPRFLMAAVMFWLLDFLCIRKRVFFRMKEQE-GDAIDPPLCISDSNRL 1253400 Query 73 FTLESLRAVWYGQKLDFFKSARLGGAAPNTEVFPLDGDARAAERILDYARGRRPLILNFG 132 F+LESL+AVW+G KLDF K+A LG APNTEV L+ R+ RILDYA+ +RPLILNFG Sbjct 1253399 FSLESLKAVWHGHKLDFLKAAHLGHGAPNTEVVQLEDQRRS--RILDYAKDKRPLILNFG 1253226 Query 133 SCSXPPFMTRLSAFQRVARQYADIADSLLVYIEEAHPSDGWVSSDAPVQIPRHRCLEDRL 192 SC+ PPFM RL AFQ V +Q ADIADS++VYIEEAHPSDGW+S+DAP QIP+HRCLEDRL Sbjct 1253225 SCT*PPFMARLKAFQGVVQQNADIADSVVVYIEEAHPSDGWMSTDAPYQIPKHRCLEDRL 1253046 Query 193 RAAQMLHREAAGSAVVVDSMQNSCNAAYGAYFERLYIVKDATVVYQGGRGPEGYRIAELR 252 AAQ++H E G VVVDSM+NS NAAYGAYF+RLYI+++ +VYQGGRGPEGYRI ELR Sbjct 1253045 NAAQLMHLEVPGCLVVVDSMENSSNAAYGAYFDRLYILQEGKIVYQGGRGPEGYRITELR 1252866 Query 253 DWLERYRSGLQES 265 DWL++YR L++S Sbjct 1252865 DWLDQYRERLEKS 1252827 > JXSJ01000082.1 Miichthys miiuy scaffold82, whole genome shotgun sequence Length=1380955 Score = 131 bits (329), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 64/148 (43%), Positives = 94/148 (64%), Gaps = 6/148 (4%) Frame = +2 Query 116 RILDYARGRRPLILNFGSCSXPPFMTRLSAFQRVARQYADIADSLLVYIEEAHPSDGWVS 175 R+LD+ RPL++NFGS + PPF++ L AF+++ ++D+AD LLVYI+EAHPSDGWV+ Sbjct 1148261 RLLDFESSDRPLVVNFGSAT*PPFISHLPAFRQLVEDFSDVADFLLVYIDEAHPSDGWVA 1148440 Query 176 ---SDAPVQIPRHRCLEDRLRAAQMLHREAA---GSAVVVDSMQNSCNAAYGAYFERLYI 229 + +H+ LE+RL AAQ L + +V D M N+ N AYG ER+ I Sbjct 1148441 PPMGQCSFNVRKHQSLEERLGAAQKLIEHFSLPPQCQLVADCMDNNANVAYGVSNERVCI 1148620 Query 230 VKDATVVYQGGRGPEGYRIAELRDWLER 257 V+ + Y GG+GP Y + ++R WLE+ Sbjct 1148621 VQQRKIAYLGGKGPFFYNLKDVRQWLEQ 1148704 > JXSJ01000014.1 Miichthys miiuy scaffold14, whole genome shotgun sequence Length=5141783 Score = 65.9 bits (159), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 25/51 (49%), Positives = 38/51 (75%), Gaps = 0/51 (0%) Frame = +1 Query 123 GRRPLILNFGSCSXPPFMTRLSAFQRVARQYADIADSLLVYIEEAHPSDGW 173 G RPL+L+FGSC+ PPFM +L F+++ + + D+AD L++YI EAH + W Sbjct 2397355 GNRPLVLSFGSCT*PPFMFKLEEFKQLVKDFRDVADFLVIYIAEAHSTGEW 2397507 Score = 59.7 bits (143), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 32/79 (41%), Positives = 49/79 (62%), Gaps = 1/79 (1%) Frame = +1 Query 160 LLVYIEEAHPSDGWVSSDAPVQIPRHRCLEDRLRAAQMLHREAAGSAVVVDSMQNSCNAA 219 +++Y+ SDGW ++ I +HR LE+RL AAQ+L ++ VVVD M+N+ Sbjct 2398021 VILYLFLIFASDGWAFTNN-FDINQHRNLEERLSAAQILVQKEPLCPVVVDEMKNAAAIK 2398197 Query 220 YGAYFERLYIVKDATVVYQ 238 YGA ERLY+++ VVY+ Sbjct 2398198 YGALPERLYVLQAGKVVYK 2398254 Lambda K H a alpha 0.321 0.135 0.402 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 30236562300 Database: /export/cursos/20428/BI/genomes/2016/Miichthys_miiuy/genome.fa Posted date: Oct 21, 2016 4:44 PM Number of letters in database: 619,300,777 Number of sequences in database: 6,294 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 13 Window for multiple hits: 40