Command line: [exonerate -m p2g --showtargetgff -q dio2_zf.aa.fa.canviat -t genomedio2_JXSJ01000082.1.fa]
Hostname: [ws116069U]

C4 Alignment:
------------
         Query: SPP00000614_2.0DIO2 # Protein # Iodothyronine deiodinase 2 (DIO2) # Zebrafish 
        Target: JXSJ01000082.1:subseq(1096249,102467) Miichthys miiuy scaffold82, whole genome shotgun sequence
         Model: protein2genome:local
     Raw score: 982
   Query range: 0 -> 257
  Target range: 49999 -> 52467

     1 : MetGlyLeuLeuSerValAspLeuLeuValThrLeuGlnIleLeuProGlyPhePheSer :    20
         ||||||:!!  !|||! !||||||||||||||||||||||||||||||||||||||||||
         MetGlyMetAlaSerGluAspLeuLeuValThrLeuGlnIleLeuProGlyPhePheSer
 50000 : atgggcATGGCGAGTGAGGATCTGCTTGTCACACTCCAGATACTACCTGGTTTCTTTTCG : 50057

    21 : AsnCysLeuPhePheValLeuTyrAspSerIleValLeuValLysArgValValSerLeu :    40
         ||||||||||||.!!!.!||||||||||||:!:|||||||||||||||||||||||||||
         AsnCysLeuPheLeuAlaLeuTyrAspSerValValLeuValLysArgValValSerLeu
 50058 : AACTGTCTCTTTCTCGCCCTGTACGACTCCGTGGTTCTCGTGAAGCGCGTCGTGTCGCTG : 50117

    41 : LeuSerCysSerGlySer<-><->ThrGlyGluTrpGlnArgMetLeuThrThrAlaGly :    58
         |||||||||||| !!|||      :!!|||||||||!::||||||||||||:!!||||||
         LeuSerCysSerArgSerAlaGlySerGlyGluTrpArgArgMetLeuThrSerAlaGly
 50118 : CTGAGCTGCTCCAGGTCTGCCGGATCCGGAGAGTGGCGCCGCATGCTGACCTCAGCGGGG : 50177

    59 : ValArgSerIleTrpAsnSerPheLeuLeuAspAlaTyrLysGln  >>>> Target I :    74
         :!!||||||||||||||||||||||||||||||||||||||||||           1658
         LeuArgSerIleTrpAsnSerPheLeuLeuAspAlaTyrLysGln++             
 50178 : CTGCGCTCCATCTGGAACAGTTTCCTTCTGGACGCCTACAAACAGgt............. : 50227

    75 : ntron 1 >>>>  ValLysLeuGlyGluAlaAlaProAsnSerLysValValLysValT :    89
          bp           ||||||||||||...! !|||||||||||||||:!!||||||||| 
                     ++ValLysLeuGlyArgGluAlaProAsnSerLysLeuValLysValP
 50228 : ............agGTAAAACTCGGCCGCGAGGCACCCAACTCCAAACTGGTGAAGGTGC : 51928

    90 : hrGlyIleAsnArgCysTrpSerIleSer  >>>> Target Intron 2 >>>>  Gl :    99
         !!! !  !  !|||   ||||||! !!:!            36 bp              
         roAspGlyLeuArg---TrpSerSerAsn-+                         ++Il
 51929 : CTGATGGCCTTCGC---TGGAGCAGCAATat.........................agAT : 51991

   100 : yLysThrHisAsnGlnCysHisLeuLeuAspPheGluSerProAspArgProLeuValVa :   119
         !::!!.!   :!!:!!|||!.!|||||||||||||||||| !!|||||||||||||||||
         eArgAsnGlyAspGluCysArgLeuLeuAspPheGluSerSerAspArgProLeuValVa
 51992 : CCGAAATGGAGATGAGTGTCGCCTTCTGGATTTTGAGTCTTCGGATCGCCCTCTGGTGGT : 52051

   120 : lAsnPheGlySerAlaThrUnkProProPheIleSerGlnLeuProValPheArgArgMe :   139
         |||||||||||||||||||   |||||||||||||||!!.||||||!.!||||||!:!:!
         lAsnPheGlySerAlaThr***ProProPheIleSerHisLeuProAlaPheArgGlnLe
 52052 : CAACTTTGGCTCAGCCACCTGACCCCCATTCATCAGCCACCTGCCAGCTTTCCGGCAGTT : 52111

   140 : tValGluGluPheSerAspValAlaAspPheLeuLeuValTyrIleAspGluAlaHisPr :   159
         !||||||!!:||||||||||||||||||||||||||||||||||||||||||||||||||
         uValGluAspPheSerAspValAlaAspPheLeuLeuValTyrIleAspGluAlaHisPr
 52112 : GGTGGAGGACTTCAGTGATGTAGCTGATTTTCTGTTGGTGTACATTGACGAGGCTCACCC : 52171

   160 : oSerAspGlyTrpValGlyProProMetGluAsnPheSerPheGluValArgLysHisAr :   179
         ||||||||||||||||!.!|||||||||!  .!.! !||||||.!.||||||||||||!:
         oSerAspGlyTrpValAlaProProMetGlyGlnCysSerPheAsnValArgLysHisGl
 52172 : ATCTGATGGCTGGGTGGCCCCTCCCATGGGCCAATGCTCTTTTAACGTCCGGAAACATCA : 52231

   180 : gAsnLeuGluGluArgMetPheAlaAlaArgThrLeuLeuGluHisPheSerLeuProPr :   199
         !!:!||||||||||||:!:   ||||||!:!! !|||:!!||||||||||||||||||||
         nSerLeuGluGluArgLeuGlyAlaAlaGlnLysLeuIleGluHisPheSerLeuProPr
 52232 : GAGCCTGGAGGAGAGGCTCGGAGCTGCACAGAAACTCATTGAGCACTTTTCTCTGCCGCC : 52291

   200 : oGlnCysGlnLeuValAlaAspCysMetAspAsnAsnAlaAsnIleAlaTyrGlyValSe :   219
         |||||||||||||||||||||||||||||||||||||||||||:!!||||||||||||||
         oGlnCysGlnLeuValAlaAspCysMetAspAsnAsnAlaAsnValAlaTyrGlyValSe
 52292 : GCAGTGCCAGCTGGTGGCTGACTGCATGGACAACAATGCAAATGTCGCTTATGGTGTGTC : 52351

   220 : rTyrGluArgValCysIleValGlnLysAsnLysIleAlaTyrLeuGlyGlyLysGlyPr :   239
         | !!|||||||||||||||||||||:::...|||||||||||||||||||||||||||||
         rAsnGluArgValCysIleValGlnGlnArgLysIleAlaTyrLeuGlyGlyLysGlyPr
 52352 : CAATGAACGGGTGTGCAtagtgcagcagagaaagaTCGCCTACCTGGGCGGTAAGGGGCC : 52411

   240 : oPhePheTyrAsnLeuLysAspValArgArgTrpLeuGluLysCysTyrGlyLys :   257
         ||||||||||||||||||||||||||||!:!|||||||||:!! !!|||||||||
         oPhePheTyrAsnLeuLysAspValArgGlnTrpLeuGluGlnSerTyrGlyLys
 52412 : TTTTTTTTACAATCTGAAGGATGTGCGGCAGTGGCTGGAACAGAGCTACGGCAAG : 52467

vulgar: SPP00000614_2.0DIO2 0 257 . JXSJ01000082.1:subseq(1096249,102467) 49999 52467 + 982 M 46 138 G 0 6 M 27 81 5 0 2 I 0 1654 3 0 2 M 20 60 G 1 0 M 4 12 5 0 2 I 0 32 3 0 2 M 159 477
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2016-11-18
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
JXSJ01000082.1:subseq(1096249,102467)	exonerate:protein2genome:local	gene	50000	52467	982	+	.	gene_id 1 ; sequence SPP00000614_2.0DIO2 ; gene_orientation +
JXSJ01000082.1:subseq(1096249,102467)	exonerate:protein2genome:local	cds	50000	50224	.	+	.	
JXSJ01000082.1:subseq(1096249,102467)	exonerate:protein2genome:local	exon	50000	50224	.	+	.	insertions 6 ; deletions 0
JXSJ01000082.1:subseq(1096249,102467)	exonerate:protein2genome:local	splice5	50225	50226	.	+	.	intron_id 1 ; splice_site "GT"
JXSJ01000082.1:subseq(1096249,102467)	exonerate:protein2genome:local	intron	50225	51882	.	+	.	intron_id 1
JXSJ01000082.1:subseq(1096249,102467)	exonerate:protein2genome:local	splice3	51881	51882	.	+	.	intron_id 0 ; splice_site "AG"
JXSJ01000082.1:subseq(1096249,102467)	exonerate:protein2genome:local	cds	51883	51954	.	+	.	
JXSJ01000082.1:subseq(1096249,102467)	exonerate:protein2genome:local	exon	51883	51954	.	+	.	insertions 0 ; deletions 1
JXSJ01000082.1:subseq(1096249,102467)	exonerate:protein2genome:local	splice5	51955	51956	.	+	.	intron_id 2 ; splice_site "AT"
JXSJ01000082.1:subseq(1096249,102467)	exonerate:protein2genome:local	intron	51955	51990	.	+	.	intron_id 2
JXSJ01000082.1:subseq(1096249,102467)	exonerate:protein2genome:local	splice3	51989	51990	.	+	.	intron_id 1 ; splice_site "AG"
JXSJ01000082.1:subseq(1096249,102467)	exonerate:protein2genome:local	cds	51991	52467	.	+	.	
JXSJ01000082.1:subseq(1096249,102467)	exonerate:protein2genome:local	exon	51991	52467	.	+	.	insertions 0 ; deletions 0
JXSJ01000082.1:subseq(1096249,102467)	exonerate:protein2genome:local	similarity	50000	52467	982	+	.	alignment_id 1 ; Query SPP00000614_2.0DIO2 ; Align 50000 1 138 ; Align 50144 47 81 ; Align 51883 74 60 ; Align 51943 95 12 ; Align 51991 99 477
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis