TBLASTN 2.2.30+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: /export/cursos/20428/BI/genomes/2016/Miichthys_miiuy/genome.fa 6,294 sequences; 619,300,777 total letters Query= SPP00000611_2.0 # Protein # Iodothyronine deiodinase 1 (DIO1) # Zebrafish Length=226 Score E Sequences producing significant alignments: (Bits) Value JXSJ01000014.1 Miichthys miiuy scaffold14, whole genome shotgun... 102 3e-42 JXSJ01000029.1 Miichthys miiuy scaffold29, whole genome shotgun... 123 1e-29 JXSJ01000021.1 Miichthys miiuy scaffold21, whole genome shotgun... 115 4e-27 JXSJ01000082.1 Miichthys miiuy scaffold82, whole genome shotgun... 85.5 3e-17 JXSJ01000111.1 Miichthys miiuy scaffold111, whole genome shotgu... 35.8 0.34 > JXSJ01000014.1 Miichthys miiuy scaffold14, whole genome shotgun sequence Length=5141783 Score = 102 bits (255), Expect(2) = 3e-42, Method: Compositional matrix adjust. Identities = 51/113 (45%), Positives = 74/113 (65%), Gaps = 1/113 (1%) Frame = +3 Query 1 LRKLFVYISAVLMVCAAILRMSMLKLLSFISPGRMRKIHMKMGERTTMTQNPKFRYEDWG 60 L++L +Y+S +C + + ++L FISP +K+ +KMGER TMTQNP F+YEDWG Sbjct 2396940 LQRLLLYMSTAWNLCFMLSLNLICRILHFISPSLAKKVILKMGERITMTQNPNFKYEDWG 2397119 Query 61 PAFFSLAFIKTLFFVNWCSLGLEAFEGHSAPDSALITLDRQKTSVHRFLKGNR 113 S FIKT W SLG EAF G APDS +++++ +K+S+ ++LKG R Sbjct 2397120 LT-TSTTFIKTSLKHMWVSLGQEAFVGGEAPDSPVVSMEGEKSSICKYLKGAR 2397275 Score = 91.3 bits (225), Expect(2) = 3e-42, Method: Compositional matrix adjust. Identities = 39/51 (76%), Positives = 47/51 (92%), Gaps = 0/51 (0%) Frame = +1 Query 111 GNRPLVLSFGSCTUPPFLYKLDEFKQLVKDFSNVADFLIVYLAEAHATDAW 161 GNRPLVLSFGSCT PPF++KL+EFKQLVKDF +VADFL++Y+AEAH+T W Sbjct 2397355 GNRPLVLSFGSCT*PPFMFKLEEFKQLVKDFRDVADFLVIYIAEAHSTGEW 2397507 Score = 91.7 bits (226), Expect = 3e-19, Method: Composition-based stats. Identities = 50/79 (63%), Positives = 65/79 (82%), Gaps = 0/79 (0%) Frame = +1 Query 148 LIVYLAEAHATDAWAFKNNVDISVHKNleerlaaartllKEDPPCPVVVDEMNNITASKY 207 +I+YL A+D WAF NN DI+ H+NLEERL+AA+ L++++P CPVVVDEM N A KY Sbjct 2398021 VILYLFLIFASDGWAFTNNFDINQHRNLEERLSAAQILVQKEPLCPVVVDEMKNAAAIKY 2398200 Query 208 GALPERLYVIQSGKVIYQV 226 GALPERLYV+Q+GKV+Y+V Sbjct 2398201 GALPERLYVLQAGKVVYKV 2398257 > JXSJ01000029.1 Miichthys miiuy scaffold29, whole genome shotgun sequence Length=3578529 Score = 123 bits (308), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 76/210 (36%), Positives = 124/210 (59%), Gaps = 5/210 (2%) Frame = +2 Query 18 ILRMSMLKLLSFISPGRMRKIHMKMGERTTMTQNPKFRYEDWGPAFFSLAFIKTLFFVNW 77 +L ML LL F+ +K+ +KMGER +P D F+L ++ +++ Sbjct 1652012 LLAAVMLWLLDFLCI--RKKVLLKMGERQDSPDDPPVCVSD-SNKMFTLESLRAVWYGQK 1652182 Query 78 CSLGLEAFEGHSAPDS-ALITLDRQKTSVHRFLKGNRPLVLSFGSCTUPPFLYKLDEFKQ 136 A G +AP++ ++ DR++ + +KG RPL+L+FGSC+ PPF+ +L F + Sbjct 1652183 LDFLKSAHLGRAAPNTEVMLVQDRRQVRILDCMKGKRPLILNFGSCS*PPFMTRLAAFHR 1652362 Query 137 LVKDFSNVADFLIVYLAEAHATDAWAFKNN-VDISVHKNleerlaaartllKEDPPCPVV 195 +V ++++ADFL+VY+ EAH +D W + I H+ LE+RL AA+ +L E P VV Sbjct 1652363 VVSQYADIADFLVVYIEEAHPSDGWVSSDAPYQIPKHRCLEDRLRAAQLMLTEVPGTNVV 1652542 Query 196 VDEMNNITASKYGALPERLYVIQSGKVIYQ 225 VD M+N + + YGA ERLY+++ +V+YQ Sbjct 1652543 VDNMDNSSNAAYGAYFERLYIVRDERVVYQ 1652632 > JXSJ01000021.1 Miichthys miiuy scaffold21, whole genome shotgun sequence Length=4019889 Score = 115 bits (288), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 68/192 (35%), Positives = 114/192 (59%), Gaps = 3/192 (2%) Frame = -2 Query 36 RKIHMKMGERTTMTQNPKFRYEDWGPAFFSLAFIKTLFFVNWCSLGLEAFEGHSAPDSAL 95 +++ +M E+ +P D FSL +K ++ + A GH AP++ + Sbjct 1253480 KRVFFRMKEQEGDAIDPPLCISD-SNRLFSLESLKAVWHGHKLDFLKAAHLGHGAPNTEV 1253304 Query 96 ITL-DRQKTSVHRFLKGNRPLVLSFGSCTUPPFLYKLDEFKQLVKDFSNVADFLIVYLAE 154 + L D++++ + + K RPL+L+FGSCT PPF+ +L F+ +V+ +++AD ++VY+ E Sbjct 1253303 VQLEDQRRSRILDYAKDKRPLILNFGSCT*PPFMARLKAFQGVVQQNADIADSVVVYIEE 1253124 Query 155 AHATDAWAFKNN-VDISVHKNleerlaaartllKEDPPCPVVVDEMNNITASKYGALPER 213 AH +D W + I H+ LE+RL AA+ + E P C VVVD M N + + YGA +R Sbjct 1253123 AHPSDGWMSTDAPYQIPKHRCLEDRLNAAQLMHLEVPGCLVVVDSMENSSNAAYGAYFDR 1252944 Query 214 LYVIQSGKVIYQ 225 LY++Q GK++YQ Sbjct 1252943 LYILQEGKIVYQ 1252908 > JXSJ01000082.1 Miichthys miiuy scaffold82, whole genome shotgun sequence Length=1380955 Score = 85.5 bits (210), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 54/124 (44%), Positives = 79/124 (64%), Gaps = 7/124 (6%) Frame = +2 Query 108 FLKGNRPLVLSFGSCTUPPFLYKLDEFKQLVKDFSNVADFLIVYLAEAHATDAWAF---- 163 F +RPLV++FGS T PPF+ L F+QLV+DFS+VADFL+VY+ EAH +D W Sbjct 1148273 FESSDRPLVVNFGSAT*PPFISHLPAFRQLVEDFSDVADFLLVYIDEAHPSDGWVAPPMG 1148452 Query 164 KNNVDISVHKNleerlaaartllKE---DPPCPVVVDEMNNITASKYGALPERLYVIQSG 220 + + ++ H++LEERL AA+ L++ P C +V D M+N YG ER+ ++Q Sbjct 1148453 QCSFNVRKHQSLEERLGAAQKLIEHFSLPPQCQLVADCMDNNANVAYGVSNERVCIVQQR 1148632 Query 221 KVIY 224 K+ Y Sbjct 1148633 KIAY 1148644 > JXSJ01000111.1 Miichthys miiuy scaffold111, whole genome shotgun sequence Length=906342 Score = 35.8 bits (81), Expect = 0.34, Method: Compositional matrix adjust. Identities = 44/170 (26%), Positives = 75/170 (44%), Gaps = 17/170 (10%) Frame = -1 Query 7 YISAVLMVCAAILRMSMLKLLSFISPGRMRKIHMKMGERTTMTQNPKFRYEDWGPAFFSL 66 Y+ ++ + A + R+ + L G R+ + GER T ++ + E + F Sbjct 90663 YLKSIHIFSAGVSRLQIDALRKSWCCGEEREKSLSRGERQT-SEATRVSME----SSFPE 90499 Query 67 AFIKTLFFVNWCSLGLEAFEGHSAPDSALITLDRQ-KTSVHRFLKGNRPLVLSFGSCTUP 125 + K CS + + P S TL+ K+SV + + L+F SC+ Sbjct 90498 QWTKLTNMHTDCS-HTHSLSLNDPPSSLPWTLEAAIKSSV*QIMD------LNFVSCSPN 90340 Query 126 PFLYKLDEFKQLVKDFSNVADFLIV---YLAEAHATDAWAFKNNVDISVH 172 ++ DE K L +DF+ D L+ Y AE + D+ ++ VDISVH Sbjct 90339 MVIHVCDETKNLKQDFTCPRDLLVKEMRYFAEYLSVDSQRWE-EVDISVH 90193 Lambda K H a alpha 0.326 0.138 0.423 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 22627383680 Database: /export/cursos/20428/BI/genomes/2016/Miichthys_miiuy/genome.fa Posted date: Oct 21, 2016 4:44 PM Number of letters in database: 619,300,777 Number of sequences in database: 6,294 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 13 Window for multiple hits: 40