Command line: [exonerate -m p2g --showtargetgff -q celf1_hs.aa.fa.canviat -t genomecelf1_JXSJ01000100.1.fa] Hostname: [ws101182u] C4 Alignment: ------------ Query: SPP00002921_2.0 # Protein # Elav-like family member 1 (CELF1) # Human Target: JXSJ01000100.1:subseq(36195,121390) Miichthys miiuy scaffold100, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 444 Query range: 13 -> 202 Target range: 71390 -> 55669 14 : AspAlaIleLysMetPheValGlyGlnValProArgThrTrpSerGluLysAspLeuArg : 33 ||||||||||||:!:|||:!!||||||:!!||||||!.! !..!||||||||||||!:! AspAlaIleLysLeuPheIleGlyGlnIleProArgAsnLeuGluGluLysAspLeuLys 71390 : GACGCAATCAAGCTCTTCATCGGGCAGATACCCCGAAACCTGGAGGAGAAGGACCTGAAG : 71333 34 : GluLeuPheGluGlnTyrGlyAlaValTyrGluIleAsnValLeuArgAspArgSerGln : 53 :!!|||||||||!:!||| !:!!||||||:!:!..|||:!!!:!|||!:!! ! ! ProIlePheGluGlnPheGlyLysIleTyrGluLeuThrValIleLysAspLysTyrThr 71332 : CCCATCTTCGAGCAGTTTGGCAAGATCTATGAGTTGACGGTGATAAAGGACAAATACACA : 71273 54 : AsnProProGlnSerLys{G} >>>> Target Intron 1 >>>> {ly}CysCys : 62 ... !! !:!!.!!|||{|} 1635 bp {||}|||..! GlyMetHisLysGlyLys{G}+- ++{ly}CysAla 71272 : GGGATGCACAAAGGTAAG{G}ga.........................ag{GA}TGTGCC : 69611 63 : PheValThrPheTyrThrArgLysAlaAlaLeuGluAlaGlnAsnAlaLeuHisAsnMet : 82 |||:!!|||!:!! !.!!|||:!!:!!||||||:!!||||||||||||||||||.!...! PheLeuThrTyrCysAlaArgGluSerAlaLeuLysAlaGlnAsnAlaLeuHisGluGln 69610 : TTCCTGACATATTGTGCGCGCGAGTCCGCCCTCAAAGCCCAGAATGCACTGCACGAGCAG : 69551 83 : LysValLeuProGly >>>> Target Intron 2 >>>> MetHisHisProIleG : 93 |||..!||||||||| 10243 bp |||:!!!.!||||||| LysThrLeuProGly++ ++MetAsnArgProIleG 69550 : AAGACACTACCAGGGgt.........................agATGAACCGTCCAATCC : 59275 94 : lnMetLysProAlaAspSerGluLysAsnAsn{V} >>>> Target Intron 3 >> : 104 ||:!!||||||||||||||||||!..!.....{|} 1770 bp lnValLysProAlaAspSerGluSerArgGly{V}++ 59274 : AAGTGAAGCCGGCAGACAGCGAGAGCAGAGGG{G}gt....................... : 59239 105 : >> {al}GluAspArgLysLeuPheIleGlyMetIleSerLysLysCysThrGluAsnA : 122 {||}||||||||||||||||||:!:||||||:!:.!!|||:!! |||!!:!..| --{al}GluAspArgLysLeuPheValGlyMetLeuGlyLysGlnGlnThrAspThrA 59238 : ..ct{TA}GAAGACAGGAAGCTGTTTGTGGGCATGCTGGGAAAACAGCAGACGGACACGG : 57418 123 : spIleArgValMetPheSerSerPheGlyGlnIleGluGluCysArgIleLeuArgGlyP : 142 ||:!:||| !||||||..! !!||||||...||||||||||||! !:!:|||||||||| spValArgLysMetPheGluProPheGlySerIleGluGluCysThrValLeuArgGlyP 57417 : ATGTGAGGAAGATGTTCGAGCCGTTTGGAAGCATAGAGGAGTGCACGGTGCTCCGCGGGC : 57358 143 : roAspGlyLeuSerArgGlyCysAlaPheValThrPheThrThrArgAlaMetAlaGlnT : 162 |||||||| !|||!:!||| !|||! ! !||| !||| ! ! ! ! ! roAspGlyThrSerLysGlyAsnAla***GluThrAlaGlnThrAspMetGluArgGlyA 57357 : CTGATGGTACCAGCAAAGGTAACGCCTGAGAAACAGCACAAACGGACATGGAGCGCGGAC : 57298 163 : hrAlaIleLysAlaMetHisGlnAlaGlnThrMetGlu >>>> Target Intron 4 : 175 !||| !! !! :!!:!!.!.! !:!::!! 1506 bp rgAlaGluThrGlnAsnThrLysSerAsnLysValGln+- 57297 : GTGCAGAAACCCAGAATACAAAGTCAAACAAAGTCCAAgc.................... : 57257 176 : >>>> GlyCysSerSerProMetValValLysPheAlaAspThrGlnLysAspLysGl : 192 |||..!|||||| !:!!||||||||||||||||||:!!:!!|||!!:::!! ++GlyAlaSerSerSerLeuValValLysPheAlaAspSerGluLysGluArgGl 57256 : .....agGGCGCCTCGTCCAGCCTGGTGGTGAAGTTTGCCGATTCAGAGAAGGAGCGAGG : 55702 193 : uGlnLysArgMetAlaGlnGlnLeuGlnGln : 202 !! ::!|||||| !||| ! !...||| yLeuArgArgMetGlnGlnValAlaSerGln 55701 : GCTCCGACGGATGCAGCAGGTGGCCTCTCAG : 55670 vulgar: SPP00002921_2.0 13 202 . JXSJ01000100.1:subseq(36195,121390) 71390 55669 - 444 M 46 138 S 0 1 5 0 2 I 0 1631 3 0 2 S 1 2 M 27 81 5 0 2 I 0 10239 3 0 2 M 16 48 S 0 1 5 0 2 I 0 1766 3 0 2 S 1 2 M 70 210 5 0 2 I 0 1502 3 0 2 M 28 84 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2016-11-29 ##type DNA # # # seqname source feature start end score strand frame attributes # JXSJ01000100.1:subseq(36195,121390) exonerate:protein2genome:local gene 55670 71390 444 - . gene_id 1 ; sequence SPP00002921_2.0 ; gene_orientation + JXSJ01000100.1:subseq(36195,121390) exonerate:protein2genome:local cds 71252 71390 . - . JXSJ01000100.1:subseq(36195,121390) exonerate:protein2genome:local exon 71252 71390 . - . insertions 0 ; deletions 0 JXSJ01000100.1:subseq(36195,121390) exonerate:protein2genome:local splice5 71250 71251 . - . intron_id 1 ; splice_site "GA" JXSJ01000100.1:subseq(36195,121390) exonerate:protein2genome:local intron 69617 71251 . - . intron_id 1 JXSJ01000100.1:subseq(36195,121390) exonerate:protein2genome:local splice3 69617 69618 . - . intron_id 0 ; splice_site "AG" JXSJ01000100.1:subseq(36195,121390) exonerate:protein2genome:local cds 69534 69616 . - . JXSJ01000100.1:subseq(36195,121390) exonerate:protein2genome:local exon 69534 69616 . - . insertions 0 ; deletions 0 JXSJ01000100.1:subseq(36195,121390) exonerate:protein2genome:local splice5 69532 69533 . - . intron_id 2 ; splice_site "GT" JXSJ01000100.1:subseq(36195,121390) exonerate:protein2genome:local intron 59291 69533 . - . intron_id 2 JXSJ01000100.1:subseq(36195,121390) exonerate:protein2genome:local splice3 59291 59292 . - . intron_id 1 ; splice_site "AG" JXSJ01000100.1:subseq(36195,121390) exonerate:protein2genome:local cds 59242 59290 . - . JXSJ01000100.1:subseq(36195,121390) exonerate:protein2genome:local exon 59242 59290 . - . insertions 0 ; deletions 0 JXSJ01000100.1:subseq(36195,121390) exonerate:protein2genome:local splice5 59240 59241 . - . intron_id 3 ; splice_site "GT" JXSJ01000100.1:subseq(36195,121390) exonerate:protein2genome:local intron 57472 59241 . - . intron_id 3 JXSJ01000100.1:subseq(36195,121390) exonerate:protein2genome:local splice3 57472 57473 . - . intron_id 2 ; splice_site "CT" JXSJ01000100.1:subseq(36195,121390) exonerate:protein2genome:local cds 57260 57471 . - . JXSJ01000100.1:subseq(36195,121390) exonerate:protein2genome:local exon 57260 57471 . - . insertions 0 ; deletions 0 JXSJ01000100.1:subseq(36195,121390) exonerate:protein2genome:local splice5 57258 57259 . - . intron_id 4 ; splice_site "GC" JXSJ01000100.1:subseq(36195,121390) exonerate:protein2genome:local intron 55754 57259 . - . intron_id 4 JXSJ01000100.1:subseq(36195,121390) exonerate:protein2genome:local splice3 55754 55755 . - . intron_id 3 ; splice_site "AG" JXSJ01000100.1:subseq(36195,121390) exonerate:protein2genome:local cds 55670 55753 . - . JXSJ01000100.1:subseq(36195,121390) exonerate:protein2genome:local exon 55670 55753 . - . insertions 0 ; deletions 0 JXSJ01000100.1:subseq(36195,121390) exonerate:protein2genome:local similarity 55670 71390 444 - . alignment_id 1 ; Query SPP00002921_2.0 ; Align 71391 14 138 ; Align 69615 61 81 ; Align 59291 88 48 ; Align 57470 105 210 ; Align 55754 175 84 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: SPP00002921_2.0 # Protein # Elav-like family member 1 (CELF1) # Human Target: JXSJ01000100.1:subseq(36195,121390) Miichthys miiuy scaffold100, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 382 Query range: 393 -> 485 Target range: 50434 -> 49999 394 : LysGluGlyProGluGlyAlaAsnLeuPheIleTyrHisLeuProGlnGluPheGlyAsp : 413 :::! !||||||||||||..!|||:!!||||||||||||||||||||||||||| !||| ArgAlaGlyProGluGlyCysAsnIlePheIleTyrHisLeuProGlnGluPheThrAsp 50434 : CGTGCAGGACCTGAGGGCTGTAACATCTTCATCTACCACCTGCCACAGGAGTTCACTGAC : 50377 414 : GlnAspLeuLeuGlnMetPheMetProPheGlyAsnValValSerAlaLysValPheIle : 433 ...!!::!!||||||||||||:!!|||||||||||||||:!!|||||||||||||||:!! SerGluIleLeuGlnMetPheLeuProPheGlyAsnValIleSerAlaLysValPheVal 50376 : TCTGAGATACTGCAGATGTTCCTGCCTTTCGGAAACGTCATCTCTGCAAAGGTCTTTGTT : 50317 434 : AspLysGlnThrAsnLeuSerLysCysPhe{G} >>>> Target Intron 1 >>>> : 444 |||::: ||||||! !||||||||||||{|} 159 bp AspArgAlaThrAsnGlnSerLysCysPhe{G}++ 50316 : GACCGTGCCACCAACCAGAGTAAATGCTTC{G}gt......................... : 50281 445 : {ly}PheValSerTyrAspAsnProValSerAlaGlnAlaAlaIleGlnSerMetAsn : 462 {||}|||||||||!:!||||||||| !|||||||||.!!|||||||||:!!|||||| ++{ly}PheValSerPheAspAsnProSerSerAlaGlnThrAlaIleGlnAlaMetAsn 50280 : ag{GC}TTTGTGAGTTTTGATAACCCGTCCAGCGCCCAGACTGCCATCCAGGCCATGAAC : 50071 463 : GlyPheGlnIleGlyMetLysArgLeuLysValGlnLeuLysArgSerLysAsnAspSer : 482 ||||||||||||||||||||||||||||||||||||||||||||| !!|||:!!! !!:! GlyPheGlnIleGlyMetLysArgLeuLysValGlnLeuLysArgProLysAspAlaAsn 50070 : GGCTTCCAGATCGGCATGAAGAGACTGAAGGTGCAGCTGAAGAGGCCCAAGGATGCCAAC : 50011 483 : LysProTyr : 485 !:!|||||| ArgProTyr 50010 : AGGCCTTAC : 50000 vulgar: SPP00002921_2.0 393 485 . JXSJ01000100.1:subseq(36195,121390) 50434 49999 - 382 M 50 150 S 0 1 5 0 2 I 0 155 3 0 2 S 1 2 M 41 123 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2016-11-29 ##type DNA # # # seqname source feature start end score strand frame attributes # JXSJ01000100.1:subseq(36195,121390) exonerate:protein2genome:local gene 50000 50434 382 - . gene_id 2 ; sequence SPP00002921_2.0 ; gene_orientation + JXSJ01000100.1:subseq(36195,121390) exonerate:protein2genome:local cds 50284 50434 . - . JXSJ01000100.1:subseq(36195,121390) exonerate:protein2genome:local exon 50284 50434 . - . insertions 0 ; deletions 0 JXSJ01000100.1:subseq(36195,121390) exonerate:protein2genome:local splice5 50282 50283 . - . intron_id 1 ; splice_site "GT" JXSJ01000100.1:subseq(36195,121390) exonerate:protein2genome:local intron 50125 50283 . - . intron_id 1 JXSJ01000100.1:subseq(36195,121390) exonerate:protein2genome:local splice3 50125 50126 . - . intron_id 0 ; splice_site "AG" JXSJ01000100.1:subseq(36195,121390) exonerate:protein2genome:local cds 50000 50124 . - . JXSJ01000100.1:subseq(36195,121390) exonerate:protein2genome:local exon 50000 50124 . - . insertions 0 ; deletions 0 JXSJ01000100.1:subseq(36195,121390) exonerate:protein2genome:local similarity 50000 50434 382 - . alignment_id 2 ; Query SPP00002921_2.0 ; Align 50435 394 150 ; Align 50123 445 123 # --- END OF GFF DUMP --- # -- completed exonerate analysis