genewise output
Score 126.28 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

                  31 MSTVDLARVGACILKHAVTGE                       AVELR 
                     M++VDLA VG  +LK A +GE                       +V+L+ 
                     MASVDLATVGLNVLKRATSGE                       SVQLQ 
JARO01002097.1:47657 agtggtgaggcagcaagatggGTATGCC  Intron 1   CAGagccc 
                     tcctatcctgtattagcccga<0-----[47720:50002]-0>gtata 
                     gttatgcatttcaggattgag                       ctggg 


                  57 SLWREHACVVAGLRRFGCVVCRWIAQDLSSLAGLLDQHGVRLVGVGPEA 
                     +LW   A V+  LRRFGC VCRW A ++S L   L  +GV L+G+GPE  
                     TLWSNQAVVLFFLRRFGCQVCRWTAAEVSKLEESLRDNGVALIGIGPEE 
JARO01002097.1:50018 actaacgggcttccatgtcgtctaggggaacggatagagggcagagcgg 
                     ctggaacttttttggtggatgggcccatgataagtgaagtcttgtgcaa 
                     gagccgggtgctccgtccggctgtgtgccggggcggcccgagtctcaga 


                 106 LGLQEFLDGDYFAG                          LYLDESKQL 
                     +GL+EF+DG +F G                          LY+DE+K+  
                     VGLKEFVDGGFFKG          E:D[gat]        LYIDETKKC 
JARO01002097.1:50165 ggcagtggggttagGGTGAGCA  Intron 2   AAGATctaggaaat 
                     tgtaattaggttag <1-----[50208:50652]-1>  tataacaag 
                     gccggtgtagccag                          tcttgaagc 


                 130 YKELGFK                          LWTQASPEFGQATWCL 
                     YK+LGFK                                           
                     YKDLGFK           R:R[agg]       ---------------- 
JARO01002097.1:50682 tagcgtaAGGTAACAA  Intron 3   CAGG                 
                     aaatgta  <2-----[50705:50864]-2>                  
                     tgcgcca                                           


                 154 RRYNSLSILPAALGKPVRDVAAK                       AKA 
                       Y++LS++PAA+GK VR+V  K                       A A 
                     --YSALSLIPAAIGKKVREVVTK                       ANA 
JARO01002097.1:50866   ttgcatacggagaagcgggaaGTAACCT  Intron 4   CAGgag 
                       acctgttccctgaatgattca<0-----[50929:51371]-0>cac 
                       catgcgtttaaggaaagtctg                       ctt 


                 180 VGIQGNLSGDLLQSGGLLVVSK                            
                      GIQGN SGDLLQSGG+L+V+K                            
                     QGIQGNFSGDLLQSGGMLIVAK                            
JARO01002097.1:51381 cgacgataggctcaggacagga                            
                     agtagatggattagggttttca                            
                     gccgccctaccggtaggtagaa                            


//
Making a D in phase 1 intron
Making a R in phase 2 intron
>JARO01002097.1:subseq(16567,51813).pep
MASVDLATVGLNVLKRATSGESVQLQTLWSNQAVVLFFLRRFGCQVCRWTAAEVSKLEES
LRDNGVALIGIGPEEVGLKEFVDGGFFKGDLYIDETKKCYKDLGFKRYSALSLIPAAIGK
KVREVVTKANAQGIQGNFSGDLLQSGGMLIVAK
//
>JARO01002097.1:subseq(16567,51813).[47657:51446].sp
ATGGCTTCTGTAGATTTGGCCACAGTTGGTCTTAACGTACTGAAGAGAGCTACTTCGGGA
GAGAGCGTTCAGCTGCAGACGCTATGGAGCAACCAGGCGGTGGTTCTGTTCTTTCTCCGC
AGGTTTGGCTGCCAGGTGTGCCGTTGGACTGCGGCTGAGGTCAGCAAGCTGGAGGAGAGC
TTGAGGGACAACGGCGTGGCACTGATTGGCATTGGCCCAGAGGAAGTGGGCCTCAAGGAG
TTTGTGGATGGAGGGTTCTTCAAAGGGGATCTTTACATTGATGAGACAAAAAAGTGCTAT
AAGGACCTGGGCTTCAAAAGGTACTCAGCTCTGAGCTTGATTCCTGCTGCAATAGGGAAG
AAAGTACGAGAGGTTGTCACTAAGGCCAATGCTCAGGGCATCCAGGGCAACTTCAGTGGA
GACCTCTTGCAGAGTGGAGGGATGCTTATAGTGGCAAAA
//
JARO01002097.1:subseq(16567,51813)	GeneWise	match	47657	51446	143.25	+	.	JARO01002097.1:subseq(16567,51813)-genewise-prediction-1
JARO01002097.1:subseq(16567,51813)	GeneWise	cds	47657	47719	0.00	+	0	JARO01002097.1:subseq(16567,51813)-genewise-prediction-1
JARO01002097.1:subseq(16567,51813)	GeneWise	intron	47720	50002	0.00	+	.	JARO01002097.1:subseq(16567,51813)-genewise-prediction-1
JARO01002097.1:subseq(16567,51813)	GeneWise	cds	50003	50207	0.00	+	0	JARO01002097.1:subseq(16567,51813)-genewise-prediction-1
JARO01002097.1:subseq(16567,51813)	GeneWise	intron	50208	50652	0.00	+	.	JARO01002097.1:subseq(16567,51813)-genewise-prediction-1
JARO01002097.1:subseq(16567,51813)	GeneWise	cds	50653	50704	0.00	+	2	JARO01002097.1:subseq(16567,51813)-genewise-prediction-1
JARO01002097.1:subseq(16567,51813)	GeneWise	intron	50705	50864	0.00	+	.	JARO01002097.1:subseq(16567,51813)-genewise-prediction-1
JARO01002097.1:subseq(16567,51813)	GeneWise	cds	50865	50928	0.00	+	1	JARO01002097.1:subseq(16567,51813)-genewise-prediction-1
JARO01002097.1:subseq(16567,51813)	GeneWise	intron	50929	51371	0.00	+	.	JARO01002097.1:subseq(16567,51813)-genewise-prediction-1
JARO01002097.1:subseq(16567,51813)	GeneWise	cds	51372	51446	0.00	+	0	JARO01002097.1:subseq(16567,51813)-genewise-prediction-1
//