genewise output
Score 231.35 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

                  15 WSIGAGALGAAALALLLANTDVFLSKPQKAALEYLEDIDLKTLEK     
                     W++  GA+G A + L LANTD++L+KP KA L YLED DL+ + K     
                     WTLVLGAVGVAMVILFLANTDILLAKPAKATLAYLEDTDLQEIGK     
JARO01005685.1:46401 tacgcggggggagactcgaagaccgacgagacgttggagccgaga     
                     gctttgctgtcttttttcacatttcaccacctcataacataatga     
                     gcgcgttattcggcccccctccggtaggaccggcggtgccggcga     


                  60                           PRTFKAKELWEKNGAVIMAVRRP 
                                                + +KA+ LW+K GAV+MAVRRP 
                               E:G[ggt]        KKLLKAQALWKKTGAVVMAVRRP 
JARO01005685.1:46536 GGTGAGGT  Intron 1   CAGGTaaccagcgctaaaggggaggccc 
                      <1-----[46537:47488]-1>  aattacactgaacgctttctggc 
                                               gggcacgctggggtggcgcgcgt 


                  84 GCFLCRE                       EAADLSSLKSMLDQLGVPL 
                     G  LCRE                       EA++LSSLK +L++ GVPL 
                     GXSLCRE                       EASELSSLKPQLEEHGVPL 
JARO01005685.1:47560 gttttagGTTCGAG  Intron 2   CAGggtgcttcacccggcggcc 
                     ggctgga<0-----[47581:48213]-0>accatcctacataaagtct 
                     aacgcag                       gctggctcgcgggacgctg 


                 110 YAVVKEHIRTEVKDFQPYFKGEIFLDEK                      
                     YAVVKE+I TEV+DF+PYF G+IFLDEK                      
                     YAVVKENIGTEVQDFRPYFAGDIFLDEK                      
JARO01005685.1:48271 tgggagaagaggcgtacttgggatcggaGTGCGTC  Intron 3     
                     acttaaatgcataatgcatcgatttaaa<0-----[48355:48487]  
                     ccagggcccagcgccaccctgcccgtgg                      


                 138    KKFYGPQRRKMMFMGFIRLGVWYNFFRAWNGGFSGNLEGEGFILGG 
                        ++FYGPQ R+M+ +G+IR+GV  NF RA   GF GN++GEGF LG  
                        QRFYGPQPRRMIGLGLIRMGVLQNFARAKRKGFQGNIKGEGFTLGA 
JARO01005685.1:48485 CAGccttgcccaaaagcgcacaggccatgcgaaagtcgaaagggtacgg 
                     -0>agtagcacggttgtgttgtgttaatcgcagagtagatagagtctgc 
                        acccccgtgggcagacctgggggctcacggaccgcccgggccagtg 


                 184 VFVVGSGKQ                       GILLEHREKEFGDKVNL 
                     VFV+G GKQ                       GILLEHREKEFGDKVN+ 
                     VFVIGPGKQ                       GILLEHREKEFGDKVNM 
JARO01005685.1:48626 gtgagcgacGTATGGT  Intron 4   CAGgaccgccgagtggagaa 
                     ttttgcgaa<0-----[48653:50002]-0>gtttaagaaatgaatat 
                     gtgcatgag                       gctgacggggtgcgccg 


                 210 LSVLEAAKMIK                                       
                      SVLEA + ++                                       
                     SSVLEAVQKVQ                                       
JARO01005685.1:50054 ttgtgggcagc                                       
                     ccttactaata                                       
                     accagacggcg                                       


//
Making a G in phase 1 intron
>JARO01005685.1:subseq(874,52368).pep
WTLVLGAVGVAMVILFLANTDILLAKPAKATLAYLEDTDLQEIGKGKKLLKAQALWKKTG
AVVMAVRRPGXSLCREEASELSSLKPQLEEHGVPLYAVVKENIGTEVQDFRPYFAGDIFL
DEKQRFYGPQPRRMIGLGLIRMGVLQNFARAKRKGFQGNIKGEGFTLGAVFVIGPGKQGI
LLEHREKEFGDKVNMSSVLEAVQKVQ
//
>JARO01005685.1:subseq(874,52368).[46401:50086].sp
TGGACCCTGGTCCTGGGTGCTGTAGGTGTTGCCATGGTGATCCTCTTCCTCGCCAACACT
GACATCCTGCTGGCTAAACCGGCGAAAGCCACCCTGGCGTACTTGGAGGATACGGACCTC
CAGGAGATCGGGAAAGGTAAGAAGCTGCTCAAAGCCCAGGCCCTTTGGAAGAAGACGGGT
GCGGTGGTCATGGCCGTGCGCCGGCCTGGATGATCCTTGTGCAGAGAGGAGGCCTCTGAG
CTGTCCTCTCTCAAGCCCCAGCTGGAGGAACACGGGGTCCCTCTGTACGCCGTAGTGAAG
GAGAACATCGGCACAGAGGTCCAGGACTTCAGACCCTACTTCGCTGGGGACATCTTCCTG
GATGAGAAGCAACGCTTCTACGGCCCCCAGCCTAGGAGGATGATCGGACTGGGACTCATC
CGTATGGGGGTGCTGCAGAACTTTGCCCGAGCCAAGAGGAAAGGCTTCCAGGGCAACATC
AAGGGGGAGGGCTTCACACTGGGTGCGGTGTTTGTGATCGGACCTGGGAAACAGGGGATC
CTTCTGGAACACCGGGAGAAGGAGTTTGGGGACAAGGTCAACATGTCATCCGTCTTAGAG
GCAGTCCAGAAGGTCCAG
//
JARO01005685.1:subseq(874,52368)	GeneWise	match	46401	50086	231.35	+	.	JARO01005685.1:subseq(874,52368)-genewise-prediction-1
JARO01005685.1:subseq(874,52368)	GeneWise	cds	46401	46536	0.00	+	0	JARO01005685.1:subseq(874,52368)-genewise-prediction-1
JARO01005685.1:subseq(874,52368)	GeneWise	intron	46537	47488	0.00	+	.	JARO01005685.1:subseq(874,52368)-genewise-prediction-1
JARO01005685.1:subseq(874,52368)	GeneWise	cds	47489	47580	0.00	+	2	JARO01005685.1:subseq(874,52368)-genewise-prediction-1
JARO01005685.1:subseq(874,52368)	GeneWise	intron	47581	48213	0.00	+	.	JARO01005685.1:subseq(874,52368)-genewise-prediction-1
JARO01005685.1:subseq(874,52368)	GeneWise	cds	48214	48354	0.00	+	0	JARO01005685.1:subseq(874,52368)-genewise-prediction-1
JARO01005685.1:subseq(874,52368)	GeneWise	intron	48355	48487	0.00	+	.	JARO01005685.1:subseq(874,52368)-genewise-prediction-1
JARO01005685.1:subseq(874,52368)	GeneWise	cds	48488	48652	0.00	+	0	JARO01005685.1:subseq(874,52368)-genewise-prediction-1
JARO01005685.1:subseq(874,52368)	GeneWise	intron	48653	50002	0.00	+	.	JARO01005685.1:subseq(874,52368)-genewise-prediction-1
JARO01005685.1:subseq(874,52368)	GeneWise	cds	50003	50086	0.00	+	0	JARO01005685.1:subseq(874,52368)-genewise-prediction-1
//