genewise output Score 736.25 bits over entire alignment Scores as bits over a synchronous coding model Warning: The bits scores is not probablistically correct for single seqs See WWW help for more info 81 EVKKLFKSLCVPYFVLELDQT DG +VK LFK L V + VLELD +G QVKNLFKDLNVQFGVLELDLV E:E[gag] EG JARO01000300.1:40018 cgaactagcagctggtgcgcgGGTAAGAA Intron 1 CAGAGgg ataattaatatatgttatatt <1-----[40082:40750]-1> ag gtgtccaccctgttggggttg gt 105 RALEGTLSELAAETDLPVVFVKQRKIGGHGPTLK + + L E+ + +P VF+ + +GG T++ SSYQDVLFEMTGQKTVPNVFINKTHVGGCDKTMQ JARO01000300.1:40759 tatcggctgaagcaagcagtaaaacgggtgaaac cgaaatttatcgaactcatttaacatgggaacta gctgtggtagcgagacatccccacccgctcgagg 139 AYQEGRLQKLLKMNGPEDLPKSYDYD A+++G L++LL P YDYD AHKDGLLRQLLGEEEP-----AYDYD JARO01000300.1:40861 GTGCGAT Intron 2 CAGgcaggctcctcggggc gtgtg <0-----[40861:41949]-0>caaagttgattgaaac caaaa tcgtccgtgggcaaaa ctctc 165 LIIIGGGSGGLAAAK EAAQYGKKVMV LI+IGGGSGGLA +K EAA GKKVMV LIVIGGGSGGLACSK EAALLGKKVMV JARO01000300.1:42013 cagagggtggcgttaGTGGGGC Intron 3 CAGgggttgaagag ttttgggcggtcgca<0-----[42058:43623]-0>accttgaattt ctacgacaggtcttg aaaagcggggc 191 LDFVTPTPLGTRW LGGTCVNVGC LD+V PTP+GT W LGGTCVNVGC LDYVVPTPIGTTW G:G[ggt] LGGTCVNVGC JARO01000300.1:43657 cgtggcacagaatGGTGACTG Intron 4 CAGGTcggatgaggt taattccctgccg <1-----[43697:43794]-1> tggcgtatgg gccgctgacaatg gtcatgtgcc 215 IPKKLMHQAALLGQALQDSRNYGWKVEET IPKKLMHQ ALLG ALQDSRN+GW+ ++ IPKKLMHQTALLGTALQDSRNFGWEFDKK JARO01000300.1:43827 acaacaccagccgagccgtcatgtgtgaa tcaattaaccttgcctaacgatggataaa taggcgcgacggtcggactttttggtcga 244 KHDWDRMIEAVQNHIGSLNWGYR +H+W+ M AV N+I SLNWGYR V:V[gtg] EHNWETMKTAVNNYISSLNWGYR JARO01000300.1:43914 GGTAAAGG Intron 5 CAGTGgcatgaaaaggaataatcatgta <1-----[43915:44077]-1> aaagactacctaaatgctaggag gccggtgggtgccccccccgccg 268 VALREKKVVYENAYGQFIGPHRIK AT V LR+K V Y N+Y +F+ PH+IK A VQLRDKNVNYVNSYAEFMEPHKIK AI JARO01000300.1:44149 gcccgaagatgattggtagccaaaGTGAGTG Intron 6 CAGga tatgaaataatacacattacaata<0-----[44221:44370]-0>ct gggtcgctctcctctgtggtcaca ca 294 NNKGKEKIYSAERFLIATGERPRYLGIPGDKEYCIS N +GKE +++A ++++ATGERPRYLGIPGDKE+CI+ NKRGKETFHTAAKYVLATGERPRYLGIPGDKEFCIT JARO01000300.1:44377 aacgagatcaggatgtgaggccctcgacggagttaa aaggaactacccaattccgagcgatgtcgaaatgtc caaaggcccaaggtgggcagtaccgtctgcggcccc 330 DDLFSLPYCPGKTLVVGASYVAL DDLFSLPYCPGKTLVVGASYVAL S:S[agc] DDLFSLPYCPGKTLVVGASYVAL JARO01000300.1:44485 AGGTGAGGC Intron 7 CAGCggcttccttcgaacggggttggc <2-----[44487:45062]-2> aattctcagcgactttgccatct ccgccgtccggaggggtcccgca 354 ECAGFLAGIGLDVTVMVRSILLRGFDQDMANKIGEHMEEHGIKFIRQFV ECAGFLAG+GLDVTVMVRSILLRGFDQDMAN++GEHMEEHG++F+R+FV ECAGFLAGLGLDVTVMVRSILLRGFDQDMANRVGEHMEEHGVRFLRKFV JARO01000300.1:45133 gtggtcggcgcggagagctacccgtgcgagacgggcaggcggatcaatg agcgttcgtgtatctttgctttggtaaatcagtgaataaagtgttgatt gctccaaagggtctcggcctcctctcgcgtcttcacgggtgcgccggtt 403 PIK VEQIEAGTPGRLRVVAQSTNSEE P K VEQ+E G+PGRL+V A+ST +E PTK VEQLETGSPGRLKVTAKSTEIDE JARO01000300.1:45280 caaGTGAGGT Intron 8 CAGggctgagtcgatagagatagagg cca<0-----[45289:45389]-0>taatacgccggtatccaccataa ctg agggatgctagggcacgaaatta 429 IIEGEYNT VMLAIGRDACTRKIGLET IEGEYNT V++A+GRDACT IGL+ AIEGEYNT VLIAVGRDACTGNIGLDK JARO01000300.1:45459 gagggtaaGTACGTA Intron 9 CAGgtagggcggtagaagcga ctagaaac<0-----[45483:45965]-0>tttctggacgcgatgtaa ctaagctt agttgcccccacccccca 455 VGVKINE TGKIPVTDEEQTNVPY GVK+NE GKIP DEEQTNVP+ AGVKVNE K:K[aag] NGKIPANDEEQTNVPH JARO01000300.1:46020 gggagagAAGTATGTT Intron 10 CAGGagaacgagggcaagcc cgtataa <2-----[46043:46426]-2> agatccaaaaacatca ttcaccg cggcggtcaggtcgcc 479 IYAIGDILEDKVELTPVAIQAGRLLAQRLYAGSTVK IYAIGDILE K ELTPVAIQAG+LLA+RL+ GSTVK IYAIGDILEGKWELTPVAIQAGKLLARRLFGGSTVK JARO01000300.1:46476 atgaggacggatgcacggacggatcgccctggtaga tactgattagagatcctctacgattcggttggccta ctccactgggggagacgtcgtgaggccactagcagg 515 CDYENVPTTVFTPLEYGACGLSEEKA CDY NVPTTVFTPLEYG CGLSEEKA CDYINVPTTVFTPLEYGCCGLSEEKA JARO01000300.1:46584 GTGTGGT Intron 11 CAGtgtaagcaagtaccgtgttgctggag <0-----[46584:47048]-0>gaatatcccttcctaaggggtcaaac tccattcctgtatggtactatcaggt 541 VEKFGEENIE VYHSYFWPLEWTIPSR VE +GEENIE VYHS FWPLE+T+P R VEMYGEENIE VYHSLFWPLEFTVPGR JARO01000300.1:47127 ggatgggaagGTATCTG Intron 12 TAGgtcacttccgtagcga tatagaaata<0-----[47157:47310]-0>taagttgctatctcgg gggtaggccg gctcctggggctctag 567 DNNKCYAKIICNTKDN ERVVGFHVLG DNNKCYAK++CN D+ ERVVGFH LG DNNKCYAKVVCNKLDS ERVVGFHYLG JARO01000300.1:47359 gaaattgaggtaacgaGTAAGTG Intron 13 TAGgcgggtcttg aaaagacattgaatag<0-----[47407:47487]-0>agttgtaatg cccatctgtgtcagct gagtgcccgt 593 PNAGEVTQGFAAALKCGLTKKQLDSTIGIHPVCAE P+AGEVTQG+AAA+KCG+TK+QLD TIGIHP CAE PSAGEVTQGYAAAMKCGMTKEQLDITIGIHPTCAE JARO01000300.1:47518 caggggacgtgggaatgaaagccgaaagaccatgg cgcgatcagaccctaggtcaaatatctgtaccgca ccatgccgctaacggccgtgaaaccgttccactag 628 VFTTLSVTKRSGASILQAGC +FTT+ +TKRSGA I QAGC IFTTMEITKRSGADITQAGC JARO01000300.1:47623 GTAAACT Intron 14 CAGataaagaaaatgggaacggt <0-----[47623:47814]-0>ttcctatcagcgcatcacgg cctcggaagaaatcctatcc // Making a E in phase 1 intron Making a G in phase 1 intron Making a V in phase 1 intron Making a S in phase 2 intron Making a K in phase 2 intron >JARO01000300.1:subseq(1,97159).pep QVKNLFKDLNVQFGVLELDLVEEGSSYQDVLFEMTGQKTVPNVFINKTHVGGCDKTMQAH KDGLLRQLLGEEEPAYDYDLIVIGGGSGGLACSKEAALLGKKVMVLDYVVPTPIGTTWGL GGTCVNVGCIPKKLMHQTALLGTALQDSRNFGWEFDKKVEHNWETMKTAVNNYISSLNWG YRVQLRDKNVNYVNSYAEFMEPHKIKAINKRGKETFHTAAKYVLATGERPRYLGIPGDKE FCITSDDLFSLPYCPGKTLVVGASYVALECAGFLAGLGLDVTVMVRSILLRGFDQDMANR VGEHMEEHGVRFLRKFVPTKVEQLETGSPGRLKVTAKSTEIDEAIEGEYNTVLIAVGRDA CTGNIGLDKAGVKVNEKNGKIPANDEEQTNVPHIYAIGDILEGKWELTPVAIQAGKLLAR RLFGGSTVKCDYINVPTTVFTPLEYGCCGLSEEKAVEMYGEENIEVYHSLFWPLEFTVPG RDNNKCYAKVVCNKLDSERVVGFHYLGPSAGEVTQGYAAAMKCGMTKEQLDITIGIHPTC AEIFTTMEITKRSGADITQAGC // >JARO01000300.1:subseq(1,97159).[40018:47874].sp CAGGTTAAGAATCTCTTCAAAGACCTCAACGTTCAGTTTGGTGTGTTGGAGCTGGATCTT GTGGAGGAGGGTTCGAGCTATCAGGATGTGCTGTTTGAAATGACCGGGCAAAAGACAGTC CCAAATGTCTTCATCAACAAAACCCACGTCGGGGGCTGTGACAAGACAATGCAGGCTCAC AAGGATGGCCTCTTGCGTCAGTTGCTGGGCGAAGAAGAACCAGCCTATGACTATGACCTC ATTGTAATCGGGGGAGGCTCAGGGGGGCTTGCCTGTTCTAAGGAAGCAGCATTATTGGGC AAGAAGGTGATGGTCCTGGACTACGTGGTCCCTACGCCAATCGGAACAACTTGGGGTCTG GGTGGCACATGTGTGAATGTGGGCTGCATTCCAAAGAAGCTCATGCACCAGACAGCCCTG CTGGGTACCGCGCTGCAAGACTCTCGTAATTTTGGTTGGGAGTTTGACAAGAAAGTGGAG CACAACTGGGAGACTATGAAGACGGCTGTGAACAACTACATCAGCTCCCTCAACTGGGGC TACAGGGTGCAGCTGCGTGACAAGAACGTTAACTATGTCAACTCTTACGCTGAGTTTATG GAGCCTCACAAAATCAAAGCCATAAACAAACGAGGAAAGGAGACCTTCCACACAGCAGCG AAGTATGTGTTGGCGACCGGAGAGCGTCCACGCTACCTGGGTATCCCTGGGGACAAGGAG TTCTGCATCACCAGCGACGACCTGTTCTCCCTGCCTTACTGCCCGGGGAAAACGCTGGTG GTGGGTGCCTCCTACGTGGCCCTAGAGTGCGCTGGCTTCCTAGCAGGACTGGGGCTGGAT GTCACTGTCATGGTGCGCTCCATTCTCCTCCGTGGCTTTGACCAGGACATGGCTAACCGT GTTGGCGAACACATGGAGGAGCATGGGGTCAGGTTCCTCAGGAAGTTTGTTCCCACTAAG GTAGAGCAGTTGGAAACTGGGTCCCCTGGAAGGTTGAAGGTCACAGCCAAGTCAACAGAA ATTGATGAAGCCATTGAAGGAGAGTACAATACTGTATTGATTGCTGTGGGCCGCGACGCC TGCACAGGCAACATCGGCCTCGACAAAGCTGGTGTCAAAGTCAACGAGAAGAACGGGAAG ATCCCGGCGAATGACGAAGAGCAGACTAACGTGCCCCACATCTATGCCATCGGAGACATT CTGGAGGGGAAGTGGGAACTGACACCCGTGGCTATCCAGGCTGGGAAATTGCTGGCCCGC CGACTCTTTGGAGGGTCCACAGTGAAGTGTGACTACATAAATGTTCCCACCACTGTGTTT ACACCTCTGGAGTATGGATGCTGTGGACTTTCCGAAGAGAAGGCTGTGGAGATGTATGGA GAGGAGAACATCGAGGTGTACCATAGCCTCTTTTGGCCGCTGGAGTTCACTGTCCCTGGA AGGGACAACAACAAATGTTACGCTAAGGTTGTGTGTAACAAACTGGACAGTGAGCGAGTG GTTGGGTTCCACTACTTGGGTCCCAGCGCAGGTGAGGTCACCCAGGGCTATGCAGCAGCC ATGAAGTGCGGCATGACTAAGGAACAACTAGACATCACGATTGGTATCCACCCAACCTGT GCAGAGATCTTCACTACCATGGAGATAACAAAGAGATCAGGAGCTGACATCACTCAAGCT GGCTGC // JARO01000300.1:subseq(1,97159) GeneWise match 40018 47874 740.24 + . JARO01000300.1:subseq(1,97159)-genewise-prediction-1 JARO01000300.1:subseq(1,97159) GeneWise cds 40018 40081 0.00 + 0 JARO01000300.1:subseq(1,97159)-genewise-prediction-1 JARO01000300.1:subseq(1,97159) GeneWise intron 40082 40750 0.00 + . JARO01000300.1:subseq(1,97159)-genewise-prediction-1 JARO01000300.1:subseq(1,97159) GeneWise cds 40751 40860 0.00 + 2 JARO01000300.1:subseq(1,97159)-genewise-prediction-1 JARO01000300.1:subseq(1,97159) GeneWise intron 40861 41949 0.00 + . JARO01000300.1:subseq(1,97159)-genewise-prediction-1 JARO01000300.1:subseq(1,97159) GeneWise cds 41950 42057 0.00 + 0 JARO01000300.1:subseq(1,97159)-genewise-prediction-1 JARO01000300.1:subseq(1,97159) GeneWise intron 42058 43623 0.00 + . JARO01000300.1:subseq(1,97159)-genewise-prediction-1 JARO01000300.1:subseq(1,97159) GeneWise cds 43624 43696 0.00 + 0 JARO01000300.1:subseq(1,97159)-genewise-prediction-1 JARO01000300.1:subseq(1,97159) GeneWise intron 43697 43794 0.00 + . JARO01000300.1:subseq(1,97159)-genewise-prediction-1 JARO01000300.1:subseq(1,97159) GeneWise cds 43795 43914 0.00 + 2 JARO01000300.1:subseq(1,97159)-genewise-prediction-1 JARO01000300.1:subseq(1,97159) GeneWise intron 43915 44077 0.00 + . JARO01000300.1:subseq(1,97159)-genewise-prediction-1 JARO01000300.1:subseq(1,97159) GeneWise cds 44078 44220 0.00 + 2 JARO01000300.1:subseq(1,97159)-genewise-prediction-1 JARO01000300.1:subseq(1,97159) GeneWise intron 44221 44370 0.00 + . JARO01000300.1:subseq(1,97159)-genewise-prediction-1 JARO01000300.1:subseq(1,97159) GeneWise cds 44371 44486 0.00 + 0 JARO01000300.1:subseq(1,97159)-genewise-prediction-1 JARO01000300.1:subseq(1,97159) GeneWise intron 44487 45062 0.00 + . JARO01000300.1:subseq(1,97159)-genewise-prediction-1 JARO01000300.1:subseq(1,97159) GeneWise cds 45063 45288 0.00 + 1 JARO01000300.1:subseq(1,97159)-genewise-prediction-1 JARO01000300.1:subseq(1,97159) GeneWise intron 45289 45389 0.00 + . JARO01000300.1:subseq(1,97159)-genewise-prediction-1 JARO01000300.1:subseq(1,97159) GeneWise cds 45390 45482 0.00 + 0 JARO01000300.1:subseq(1,97159)-genewise-prediction-1 JARO01000300.1:subseq(1,97159) GeneWise intron 45483 45965 0.00 + . JARO01000300.1:subseq(1,97159)-genewise-prediction-1 JARO01000300.1:subseq(1,97159) GeneWise cds 45966 46042 0.00 + 0 JARO01000300.1:subseq(1,97159)-genewise-prediction-1 JARO01000300.1:subseq(1,97159) GeneWise intron 46043 46426 0.00 + . JARO01000300.1:subseq(1,97159)-genewise-prediction-1 JARO01000300.1:subseq(1,97159) GeneWise cds 46427 46583 0.00 + 1 JARO01000300.1:subseq(1,97159)-genewise-prediction-1 JARO01000300.1:subseq(1,97159) GeneWise intron 46584 47048 0.00 + . JARO01000300.1:subseq(1,97159)-genewise-prediction-1 JARO01000300.1:subseq(1,97159) GeneWise cds 47049 47156 0.00 + 0 JARO01000300.1:subseq(1,97159)-genewise-prediction-1 JARO01000300.1:subseq(1,97159) GeneWise intron 47157 47310 0.00 + . JARO01000300.1:subseq(1,97159)-genewise-prediction-1 JARO01000300.1:subseq(1,97159) GeneWise cds 47311 47406 0.00 + 0 JARO01000300.1:subseq(1,97159)-genewise-prediction-1 JARO01000300.1:subseq(1,97159) GeneWise intron 47407 47487 0.00 + . JARO01000300.1:subseq(1,97159)-genewise-prediction-1 JARO01000300.1:subseq(1,97159) GeneWise cds 47488 47622 0.00 + 0 JARO01000300.1:subseq(1,97159)-genewise-prediction-1 JARO01000300.1:subseq(1,97159) GeneWise intron 47623 47814 0.00 + . JARO01000300.1:subseq(1,97159)-genewise-prediction-1 JARO01000300.1:subseq(1,97159) GeneWise cds 47815 47874 0.00 + 0 JARO01000300.1:subseq(1,97159)-genewise-prediction-1 //