genewise output Score 497.40 bits over entire alignment Scores as bits over a synchronous coding model Warning: The bits scores is not probablistically correct for single seqs See WWW help for more info 1 MFNRMTSLWMGD LDPYMDENFIKQAF MFNRMTSLWMGD LDPYMDENFIKQAF MFNRMTSLWMGD LDPYMDENFIKQAF JARO01006510.1: 4510 ataaaaattaggGTAAGTA Intron 1 TAGcgctaggataacgt ttagtcgtgtga<0-----[4546 : 7178]-0>tacataaattaact gccagacgggtt gcacgtgcccgatt 27 STMGETAFGVKIITHRVT GSAGY STMGE A+GVKII+HRVT GSAGY STMGENALGVKIISHRVT G:G[ggt] GSAGY JARO01006510.1: 7221 aaaggagtggaaatcagaGGGTAAGTT Intron 2 CAGTgtggt gctgaactgtattcagtc <2-----[7277 : 7533]-2> gccga tagggttgttaattcaat cttac 51 CFVEMADEASVDRCVQRLNGKLVPGSNP CFVEMADEASVDRCV RLNGKLVPGSNP CFVEMADEASVDRCVLRLNGKLVPGSNP JARO01006510.1: 7550 ttggaggggaggctgcacagatgcgtacGTAAGTA Intron 3 gttatcaacgtaggttgtagattcgcac<0-----[7634 : 8049] ttgagatgctgcatttgccggacaaata 79 PRKFKLNYATYGKRPEP PEF PRKFKLNYATYGKRPE PE+ PRKFKLNYATYGKRPEA G:S[agc] PEY JARO01006510.1: 8047 TAGcaatatatgatgaacggAGGTGAGTC Intron 4 CAGCcgt -0>cgatataaccagagcac <2-----[8103 : 8224]-2> caa tagtgacttatggaaga agt 100 SVFVGDLTSEVDDYQLHQFFLKKFPSCKGAKVVTDPYGNS SVFVGDLTSEVDD+QLHQFF+KK+PSCKG KVVTD YGNS SVFVGDLTSEVDDFQLHQFFMKKYPSCKGGKVVTDAYGNS JARO01006510.1: 8235 tgtgggcatggggtccccttaaatcttaggaggaggtgat ctttgatccataatataatttaaaccgaggattcacagac atctttgtcagtccgctgccgggctgcagcagcatccaca 140 GYGFVKFSDENEQKKALEEFQNA GYGFVKF+DENEQKKALEEFQNA R:R[aga] GYGFVKFTDENEQKKALEEFQNA JARO01006510.1: 8355 AGGTCAGAA Intron 5 CAGAgtgtgataggagcaagcggtcag <2-----[8357 : 9120]-2> gagttatcaaaaaaactaataac ttctcgcttataggaaggatgtc 164 SGLGGKPIRISIAVNK NKASTYH +GLGGKPIRISIAVNK NK + YH TGLGGKPIRISIAVNK G:S[agc] NKMNNYH JARO01006510.1: 9191 agcggacacaaaggaaAGGTAAAAC Intron 6 TAGCaaaaatc cgtggactgtgtctaa <2-----[9241 : 9431]-2> aataaaa agtgggccgtccttcg cggttct 188 -NQNNTYNTNY---------QQQYYQQPYNSYYPQWGYDQY-SGYNYGY NQN Y+ NY QQ YYQQPY SYYPQWGYDQY S YNYGY QNQNYNYSYNYSNYNNYNNFQQPYYQQPYQSYYPQWGYDQYNSSYNYGY JARO01006510.1: 9454 cacatatatataataataatcccttccctcattcctgtgctaaatatgt aaaaaaagaaagaaaaaaataacaaaacaagaacaggaaaaaggaaaga acgcctccccctcctcccccggaccggccgcctcggctcgccctccttt 226 NPYAAPPP---MMGPPPPMGMPPMPP---DMQGSTE Y PPP MMGPPP M MPPMPP M STE GSYGTPPPCPGMMGPPPQMSMPPMPPMTTEMNSSTE JARO01006510.1: 9601 gttgaccctcgaagccccaaaccaccaaagaattag gcagccccgcgttgcccatgtcctcctccataccca gatcccttcagggttacggcgtcgttgatagctctg 256 -AHDGTEEVEEDPSE TE+ E+ E EMQGSTEDAGEEAVE JARO01006510.1: 9709 GTAAGGG Intron 7 CAGgacgtaggggggggg <0-----[9709 :11268]-0>atagccaacgaacta agatttatttagata 270 PNPQVDVEELNRQYMERSEELYD PNP +DV+ LN+QYMERSEELYD D:D[gac] PNPLLDVDTLNKQYMERSEELYD JARO01006510.1:11314 GGTAAGTT Intron 8 TAGACcacccgggacaactagcaggctg <1-----[11315:11702]-1> cacttatactaaaataggaataa gcgggcgcggcggcggacagctc 294 SLMECHWLPMDTITSDISMMN SLM+CHW P+D++TSDI + N SLMDCHWQPLDSVTSDIPLAN JARO01006510.1:11774 tcagtctcccgagatgactga cttagagactagtccatctca aggcttggggccccccctacc // Making a G in phase 2 intron Making a S in phase 2 intron Making a R in phase 2 intron Making a S in phase 2 intron Making a D in phase 1 intron >JARO01006510.1:subseq(1,57277).pep MFNRMTSLWMGDLDPYMDENFIKQAFSTMGENALGVKIISHRVTGGSAGYCFVEMADEAS VDRCVLRLNGKLVPGSNPPRKFKLNYATYGKRPEASPEYSVFVGDLTSEVDDFQLHQFFM KKYPSCKGGKVVTDAYGNSRGYGFVKFTDENEQKKALEEFQNATGLGGKPIRISIAVNKS NKMNNYHQNQNYNYSYNYSNYNNYNNFQQPYYQQPYQSYYPQWGYDQYNSSYNYGYGSYG TPPPCPGMMGPPPQMSMPPMPPMTTEMNSSTEEMQGSTEDAGEEAVEDPNPLLDVDTLNK QYMERSEELYDSLMDCHWQPLDSVTSDIPLAN // >JARO01006510.1:subseq(1,57277).[4510:11836].sp ATGTTCAACAGAATGACAAGCTTGTGGATGGGTGATCTGGACCCATACATGGATGAGAAC TTCATCAAGCAAGCTTTTAGTACAATGGGGGAGAATGCTTTGGGTGTTAAAATAATTTCT CACAGAGTAACTGGTGGCTCTGCTGGATACTGTTTTGTGGAAATGGCAGATGAGGCCAGT GTGGACCGATGTGTTCTTAGGCTCAACGGGAAGTTAGTCCCAGGATCAAATCCACCTAGA AAGTTTAAGTTAAACTATGCTACATATGGGAAGAGACCAGAGGCAAGCCCAGAGTATTCA GTTTTCGTTGGTGATCTGACTTCCGAAGTGGATGACTTCCAGCTCCATCAGTTCTTCATG AAGAAGTACCCTTCGTGCAAAGGGGGCAAAGTGGTCACAGATGCCTACGGAAACTCAAGA GGTTATGGCTTTGTCAAGTTCACTGATGAAAATGAACAGAAGAAAGCACTGGAGGAATTT CAGAATGCCACAGGGCTTGGGGGGAAGCCCATCCGGATTAGCATCGCTGTTAACAAGAGC AACAAGATGAATAATTACCATCAAAACCAGAACTACAATTACAGCTACAACTACAGTAAC TACAATAACTACAACAACTTCCAGCAGCCATACTACCAGCAGCCCTACCAGAGCTACTAT CCCCAGTGGGGCTATGACCAGTACAACAGCAGTTACAACTATGGTTATGGGTCATATGGC ACCCCCCCTCCTTGCCCAGGGATGATGGGTCCTCCACCCCAGATGAGCATGCCTCCCATG CCTCCTATGACAACTGAAATGAACTCTTCCACTGAGGAAATGCAAGGTTCTACTGAAGAT GCTGGTGAAGAGGCAGTTGAAGACCCGAACCCGCTGCTGGACGTGGACACGCTGAACAAG CAGTACATGGAGCGAAGCGAAGAGCTCTATGACTCACTGATGGACTGTCATTGGCAGCCG CTGGACAGCGTCACCTCCGACATCCCTTTAGCCAAC // JARO01006510.1:subseq(1,57277) GeneWise match 4510 11836 509.38 + . JARO01006510.1:subseq(1,57277)-genewise-prediction-1 JARO01006510.1:subseq(1,57277) GeneWise cds 4510 4545 0.00 + 0 JARO01006510.1:subseq(1,57277)-genewise-prediction-1 JARO01006510.1:subseq(1,57277) GeneWise intron 4546 7178 0.00 + . JARO01006510.1:subseq(1,57277)-genewise-prediction-1 JARO01006510.1:subseq(1,57277) GeneWise cds 7179 7276 0.00 + 0 JARO01006510.1:subseq(1,57277)-genewise-prediction-1 JARO01006510.1:subseq(1,57277) GeneWise intron 7277 7533 0.00 + . JARO01006510.1:subseq(1,57277)-genewise-prediction-1 JARO01006510.1:subseq(1,57277) GeneWise cds 7534 7633 0.00 + 1 JARO01006510.1:subseq(1,57277)-genewise-prediction-1 JARO01006510.1:subseq(1,57277) GeneWise intron 7634 8049 0.00 + . JARO01006510.1:subseq(1,57277)-genewise-prediction-1 JARO01006510.1:subseq(1,57277) GeneWise cds 8050 8102 0.00 + 0 JARO01006510.1:subseq(1,57277)-genewise-prediction-1 JARO01006510.1:subseq(1,57277) GeneWise intron 8103 8224 0.00 + . JARO01006510.1:subseq(1,57277)-genewise-prediction-1 JARO01006510.1:subseq(1,57277) GeneWise cds 8225 8356 0.00 + 1 JARO01006510.1:subseq(1,57277)-genewise-prediction-1 JARO01006510.1:subseq(1,57277) GeneWise intron 8357 9120 0.00 + . JARO01006510.1:subseq(1,57277)-genewise-prediction-1 JARO01006510.1:subseq(1,57277) GeneWise cds 9121 9240 0.00 + 1 JARO01006510.1:subseq(1,57277)-genewise-prediction-1 JARO01006510.1:subseq(1,57277) GeneWise intron 9241 9431 0.00 + . JARO01006510.1:subseq(1,57277)-genewise-prediction-1 JARO01006510.1:subseq(1,57277) GeneWise cds 9432 9708 0.00 + 1 JARO01006510.1:subseq(1,57277)-genewise-prediction-1 JARO01006510.1:subseq(1,57277) GeneWise intron 9709 11268 0.00 + . JARO01006510.1:subseq(1,57277)-genewise-prediction-1 JARO01006510.1:subseq(1,57277) GeneWise cds 11269 11314 0.00 + 0 JARO01006510.1:subseq(1,57277)-genewise-prediction-1 JARO01006510.1:subseq(1,57277) GeneWise intron 11315 11702 0.00 + . JARO01006510.1:subseq(1,57277)-genewise-prediction-1 JARO01006510.1:subseq(1,57277) GeneWise cds 11703 11836 0.00 + 2 JARO01006510.1:subseq(1,57277)-genewise-prediction-1 //