genewise output Score 223.44 bits over entire alignment Scores as bits over a synchronous coding model Warning: The bits scores is not probablistically correct for single seqs See WWW help for more info 32 AAVAELPVLDARGQRVPFGALFRERRAVVVFVR +AV VLD G R+PFG L+++R+A+VVFVR SAVRNCTVLDRHGARLPFGQLYKDRKAIVVFVR JARO01000007.1:46815 tggcatagtgccggccctgcctagaagaggtga cctgagcttagagcgtctgataaagactttttg ggcccttagcctcgccccagatgcgaccccccg 65 HFLCYICKEYVEDLAKIPRSFLQ +FLCYICKEYVEDLAKIP +L+ NFLCYICKEYVEDLAKIPPDYLR JARO01000007.1:46914 GTGTGTG Intron 1 CAGattttatagtgggtgaaccgtcc <0-----[46914:47228]-0>attgatgaaataatcatccaatg tcgcctcagttgtgaacctcccc 88 EANVTLIVIGQSSYHHIE +A V L+VIGQSS+HHIE DAGVRLVVIGQSSHHHIE JARO01000007.1:47298 GTAAGTA Intron 2 CAGggggatggagcttcccag <0-----[47298:48672]-0>acgtgttttgaccaaata tttcggcgtggcttcttg 106 PFCKLTGYSHEIYVDPEREIYKRLGM PFC LT Y HEIYVDPER IYK+LGM PFCSLTKYQHEIYVDPERSIYKKLGM JARO01000007.1:48727 GTATTCA Intron 3 TAGctttcaatccgatggcgaaataacga <0-----[48727:49219]-0>ctgctcaaaaatatacaggtaaatgt tcccgaatgtatttctggtttaatgg 132 KRGEEIASS GQSPHIKSNLLSGS +RGE S SPH+KS++L+GS RRGEAPFQS -:A[gct] FSSPHVKSSVLTGS JARO01000007.1:49298 cagggctctGGTAAAAA Intron 4 CAGCTttaccgatagcaga gggacctac <1-----[49326:49470]-1> tcgcatacgttcgg aaagatcga cccctggctggctc 155 LQSLWRAVTGPLFDFQGDPAQQGGTLILGP ++S+WRA+T P+FDFQGDP QQGG LI GP MRSIWRAMTSPVFDFQGDPHQQGGALIAGP JARO01000007.1:49515 aaaatagaaacgtgtcggccccgggcaggc tggtggctcgcttatagacaaaggcttcgc ggctgacgccgatccaacatggtgcctaca 185 NNIHFIHRDRNRLDHKPINSVLQ +HF H D NRLDH PIN +LQ G:G[ggg] PEVHFAHFDMNRLDHTPINWLLQ JARO01000007.1:49605 GGTAGCAC Intron 5 CAGGGcggctgctgaaccgcacaatccc <1-----[49606:50012]-1> catatcatatagtaacctagtta tactttctcgcaaccacccgagg 209 LVGVQHVNFTNRPSVIHV L VQ V+F N+P +I V LADVQMVDFRNQPRIIDV JARO01000007.1:50084 tgggcaggtaaccaaagg tcatattatgaacgttat gattggttcgtgcgattt // Making a A in phase 1 intron Making a G in phase 1 intron >JARO01000007.1:subseq(510247,100137).pep SAVRNCTVLDRHGARLPFGQLYKDRKAIVVFVRNFLCYICKEYVEDLAKIPPDYLRDAGV RLVVIGQSSHHHIEPFCSLTKYQHEIYVDPERSIYKKLGMRRGEAPFQSAFSSPHVKSSV LTGSMRSIWRAMTSPVFDFQGDPHQQGGALIAGPGPEVHFAHFDMNRLDHTPINWLLQLA DVQMVDFRNQPRIIDV // >JARO01000007.1:subseq(510247,100137).[46815:50137].sp TCGGCGGTCCGCAACTGTACTGTATTGGACCGCCATGGCGCGCGCCTCCCCTTCGGACAG CTATATAAGGACAGGAAAGCCATCGTCGTCTTCGTCAGGAATTTCTTGTGCTACATTTGC AAAGAGTATGTTGAGGATTTGGCAAAAATCCCCCCTGACTACCTCCGCGATGCTGGTGTC AGGTTGGTCGTGATTGGGCAGTCCTCTCATCACCATATTGAGCCTTTCTGCTCCCTGACA AAATATCAGCATGAAATTTATGTTGACCCTGAGAGGAGTATTTATAAAAAACTTGGGATG CGAAGAGGAGAGGCACCTTTCCAGTCAGCTTTCTCCAGCCCCCATGTGAAGTCCAGTGTG CTGACCGGTAGCATGAGGAGCATTTGGAGAGCCATGACCAGCCCGGTATTTGACTTCCAA GGAGACCCACATCAGCAGGGTGGGGCCCTCATTGCAGGCCCAGGGCCTGAAGTCCATTTT GCTCACTTTGACATGAACCGACTAGACCACACACCCATCAACTGGCTACTGCAGTTGGCA GATGTTCAGATGGTTGATTTCAGGAATCAGCCCAGGATAATTGATGTT // JARO01000007.1:subseq(510247,100137) GeneWise match 46815 50137 223.44 + . JARO01000007.1:subseq(510247,100137)-genewise-prediction-1 JARO01000007.1:subseq(510247,100137) GeneWise cds 46815 46913 0.00 + 0 JARO01000007.1:subseq(510247,100137)-genewise-prediction-1 JARO01000007.1:subseq(510247,100137) GeneWise intron 46914 47228 0.00 + . JARO01000007.1:subseq(510247,100137)-genewise-prediction-1 JARO01000007.1:subseq(510247,100137) GeneWise cds 47229 47297 0.00 + 0 JARO01000007.1:subseq(510247,100137)-genewise-prediction-1 JARO01000007.1:subseq(510247,100137) GeneWise intron 47298 48672 0.00 + . JARO01000007.1:subseq(510247,100137)-genewise-prediction-1 JARO01000007.1:subseq(510247,100137) GeneWise cds 48673 48726 0.00 + 0 JARO01000007.1:subseq(510247,100137)-genewise-prediction-1 JARO01000007.1:subseq(510247,100137) GeneWise intron 48727 49219 0.00 + . JARO01000007.1:subseq(510247,100137)-genewise-prediction-1 JARO01000007.1:subseq(510247,100137) GeneWise cds 49220 49325 0.00 + 0 JARO01000007.1:subseq(510247,100137)-genewise-prediction-1 JARO01000007.1:subseq(510247,100137) GeneWise intron 49326 49470 0.00 + . JARO01000007.1:subseq(510247,100137)-genewise-prediction-1 JARO01000007.1:subseq(510247,100137) GeneWise cds 49471 49605 0.00 + 2 JARO01000007.1:subseq(510247,100137)-genewise-prediction-1 JARO01000007.1:subseq(510247,100137) GeneWise intron 49606 50012 0.00 + . JARO01000007.1:subseq(510247,100137)-genewise-prediction-1 JARO01000007.1:subseq(510247,100137) GeneWise cds 50013 50137 0.00 + 2 JARO01000007.1:subseq(510247,100137)-genewise-prediction-1 // 50658 0.00 + 2 JARO01000007.1:subseq(509726,100164)-genewise-prediction-1 //