genewise output
Score 254.29 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
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                  39 GLQSLTRYDQS---TDWQRKLSPEQYVVTREKGTEV              
                     G  SLTRYD +   TDW+++L+PEQYVVTREKGTEV              
                     GTSSLTRYDDAQVATDWKKRLTPEQYVVTREKGTEV              
JARO01017629.1: 2176 gaatcactgggcggagtaaatacgctggaagagagg              
                     gcgctcgaaacatccagaagtccaaattcgaagcat              
                     cacttgactcgagcacgggggcaggtggcggatagg              


                  72                        PFSGIYLNHNEVGMYHCVCCDSPLF  
                                            PFSGIYLNH E GMYHCVCCD+PLF  
                                            PFSGIYLNHTEEGMYHCVCCDTPLF  
JARO01017629.1: 2284 GTGAGTA  Intron 1   CAGctagatcacagggatctgttgacct  
                     <0-----[2284 : 2513]-0>ctggtataacaagtaagtggacctt  
                                            gctgccgccgggagcctccccaccc  


                  97                           SEAKYDAGAGWPSFCEAHGTWEK 
                                               S AKYD+G GWPSF EAHGTWE  
                                S:S[agc]       SAAKYDSGTGWPSFREAHGTWEH 
JARO01017629.1: 2589 AGGTAGGGG  Intron 2   CAGCtggatgtgagtcttcggcgatgc 
                       <2-----[2591 : 4305]-2> cccaaacgcggcctgacagcgaa 
                                               tacgtccgatgatccgctaagat 


                 121 DESHANIVRRPDNSLGSTGTEVICKH                        
                     DESHANI+RRPDNSLGS  TEVICK                         
                     DESHANILRRPDNSLGSEATEVICKQ                        
JARO01017629.1: 4376 ggacgaaccccgatcgaggaggatacGTAGGGC  Intron 3   CAG 
                     aagacattggcaactggaccattgaa<0-----[4454 : 5207]-0> 
                     cgctcctgtcgccggctgtaacccag                        


                 147 CDAHLGHVFEDGPDPTGQRFCINSVALNFKPR                  
                     CDAHLGHVF+DGPDPTGQRFCINS+ALNF+P+                  
                     CDAHLGHVFDDGPDPTGQRFCINSLALNFRPK                  
JARO01017629.1: 5208 tggccgcgtgggcgcagccttaaatgtataca                  
                     gacatgattaagcaccgagtgtagtctatgca                  
                     ctcttttgtttagtcccggcccccgtgtcaca                  


//
Making a S in phase 2 intron
>JARO01017629.1:subseq(1,8465).pep
GTSSLTRYDDAQVATDWKKRLTPEQYVVTREKGTEVPFSGIYLNHTEEGMYHCVCCDTPL
FSSAAKYDSGTGWPSFREAHGTWEHDESHANILRRPDNSLGSEATEVICKQCDAHLGHVF
DDGPDPTGQRFCINSLALNFRPK
//
>JARO01017629.1:subseq(1,8465).[2176:5303].sp
GGCACAAGCTCTCTTACGCGATACGATGACGCGCAAGTGGCCACAGACTGGAAGAAGAGG
TTGACCCCAGAGCAGTATGTGGTGACCAGGGAGAAAGGTACAGAGGTGCCGTTCAGTGGG
ATCTACCTGAACCACACGGAGGAGGGAATGTACCACTGTGTCTGCTGCGACACACCCCTC
TTCAGCTCTGCAGCCAAGTATGACTCCGGGACAGGTTGGCCATCTTTCCGCGAGGCCCAT
GGAACATGGGAACATGACGAGAGCCATGCCAACATTCTGCGTCGCCCGGACAACTCGCTG
GGCAGTGAGGCTACAGAAGTCATCTGCAAACAGTGCGATGCCCATCTTGGTCATGTGTTT
GATGATGGACCGGATCCCACCGGCCAGCGGTTCTGCATCAACAGCTTGGCTTTGAATTTC
AGACCCAAA
//
JARO01017629.1:subseq(1,8465)	GeneWise	match	2176	5303	256.29	+	.	JARO01017629.1:subseq(1,8465)-genewise-prediction-1
JARO01017629.1:subseq(1,8465)	GeneWise	cds	2176	2283	0.00	+	0	JARO01017629.1:subseq(1,8465)-genewise-prediction-1
JARO01017629.1:subseq(1,8465)	GeneWise	intron	2284	2513	0.00	+	.	JARO01017629.1:subseq(1,8465)-genewise-prediction-1
JARO01017629.1:subseq(1,8465)	GeneWise	cds	2514	2590	0.00	+	0	JARO01017629.1:subseq(1,8465)-genewise-prediction-1
JARO01017629.1:subseq(1,8465)	GeneWise	intron	2591	4305	0.00	+	.	JARO01017629.1:subseq(1,8465)-genewise-prediction-1
JARO01017629.1:subseq(1,8465)	GeneWise	cds	4306	4453	0.00	+	1	JARO01017629.1:subseq(1,8465)-genewise-prediction-1
JARO01017629.1:subseq(1,8465)	GeneWise	intron	4454	5207	0.00	+	.	JARO01017629.1:subseq(1,8465)-genewise-prediction-1
JARO01017629.1:subseq(1,8465)	GeneWise	cds	5208	5303	0.00	+	0	JARO01017629.1:subseq(1,8465)-genewise-prediction-1
//