genewise output Score 174.22 bits over entire alignment Scores as bits over a synchronous coding model Warning: The bits scores is not probablistically correct for single seqs See WWW help for more info 112 YLSGSKVMPGSEPAAHCYCGHQ FGQF Y SG K +PGS P AH Y GHQ FG + YFSGGKPFPGSVPLAHRYGGHQ FGYW JARO01001490.1:43441 ttaggactcgtgccgcatggccGTACACC Intron 1 AAGtgtt atgggactcgctctcagaggaa<0-----[43507:43595]-0>tgag tctctagttataatccataccg tccg 138 AGQLGDGAACYLGEVKA AGQSPE AGQLGDG A LGE G+ AGQLGDGRAHLLGEYTN P:K[aag] DGE--- JARO01001490.1:43608 ggccgggagctcggtaaAAGTGAGTG Intron 2 CAGGggg cgatgaggcattgaaca <2-----[43661:43821]-2> aga acgtataatcggcgcgc cag 162 LLRENPTGRWEIQVKGAGLTPYS RWE+Q+KG+G TPYS --------RWELQLKGSGKTPYS R:R[cga] JARO01001490.1:43832 atgcccagtgaacttCGGTATTGC Intron 3 TAGA ggatatagcgaccac <2-----[43879:44016]-2> agggggacgagatta 186 QADGRKVLRSSIREFLCSEAVFALGVPTTRAG DGR VLRSS+REFLCSEA+ LGVPT+RA SGDGRAVLRSSVREFLCSEAMHYLGVPTSRAA JARO01001490.1:44018 tgggaggtcttgcgtctaggactcggcaaagg cgaggcttgcctgattggactaatgtccggcc tatggcggctgcggcgccgcgctgttcccata 218 VVTSDSRVMRDIFYDGNPRMER ++ SD V RD FYDGN ER S:S[agc] LIVSDEPVWRDQFYDGNVTKER JARO01001490.1:44114 AGGTAACCT Intron 4 AAGCcagtggcgtagcttggagaaga <2-----[44116:45360]-2> tttcaactggaataagatcaag ctcttaaggacgctcactggga 241 SVVLRIAPSFIRFGSFEIFKRAD +VVLR+A S++R+GS+EI+ R+ C:G[gga] AVVLRLAKSWFRIGSLEILTRSG JARO01001490.1:45428 GGTAAGAC Intron 5 CAGGAgggcccgatttcagtcgacaaag <1-----[45429:46138]-1> ctttgtcacgtgtgctattcggg tcttctcgagccaacagtccact 265 EFTGRQGPSYGHDELR QMLEYVI E L ++L++++ EV-----------DLL T:R[agg] KLLDFIL JARO01001490.1:46210 gg gccAGGTGAGAT Intron 6 AAGGactgtat at att <2-----[46227:48011]-2> attattt gg tcc aggcctg 289 ENFYPEIHRNYPDLTERNT AFFKEVT E ++P I N PD + F+ +V EKYFPTIQSNDPD---KFL VFYSKVV JARO01001490.1:48034 gattcaactagcg attGTAAGTT Intron 7 CAGgtttagg aaatcctacaaca att<0-----[48082:48956]-0>ttacatt aatcagagactcc gtg gttcacg 315 VRTARLVAQWQCVGFCH VLNTDN TA+LVA+W VGF H V NTDN NETAQLVARWMSVGFAH G:G[ggt] VCNTDN JARO01001490.1:48978 agagccggctatggtgcGGTACGAA Intron 8 CAGGTgtaaga aaccattcggtctgtca <1-----[49030:50000]-1> tgacaa cggagcgcgggttcctt gctgcc 339 MSILGLTLDYGPFGFMDRFDP FI +S+L +T+DYGPFGFM+ FDP F+ FSLLSVTIDYGPFGFMESFDP D:S[agc] FV JARO01001490.1:50021 tatctgaagtgctgtagttgcAGTAAGTG Intron 9 CAGGCtg tgttctctaagctgttactac <1-----[50085:50640]-1> tt ctgcacactctattcggttca tt 363 CNASDNSGRYSYQAQPAICRWNLARLAEALEPDLPPDR N SD+ GRYS Q R+NL +LAEAL P L P++ PNWSDDEGRYSMGQQANGGRFNLGKLAEALGPILRPEQ JARO01001490.1:50649 cattggggctaagccgaggatacgacgggcgcacacgc cagcaaaggagtgaacagggtatgatcactgcttgcaa ccgttcgggccgaggccccgccgaggggagaccggaga // Making a K in phase 2 intron Making a R in phase 2 intron Making a S in phase 2 intron Making a G in phase 1 intron Making a R in phase 2 intron Making a G in phase 1 intron Making a S in phase 1 intron >JARO01001490.1:subseq(43248,78521).pep YFSGGKPFPGSVPLAHRYGGHQFGYWAGQLGDGRAHLLGEYTNKDGERWELQLKGSGKTP YSRSGDGRAVLRSSVREFLCSEAMHYLGVPTSRAASLIVSDEPVWRDQFYDGNVTKERGA VVLRLAKSWFRIGSLEILTRSGEVDLLRKLLDFILEKYFPTIQSNDPDKFLVFYSKVVNE TAQLVARWMSVGFAHGVCNTDNFSLLSVTIDYGPFGFMESFDPSFVPNWSDDEGRYSMGQ QANGGRFNLGKLAEALGPILRPEQ // >JARO01001490.1:subseq(43248,78521).[43441:50762].sp TATTTCAGTGGCGGTAAACCGTTTCCTGGATCTGTACCACTTGCCCACAGATATGGAGGC CACCAGTTTGGCTACTGGGCAGGCCAGCTTGGAGATGGAAGAGCTCACTTGCTGGGCGAG TACACGAACAAGGACGGAGAGAGATGGGAGCTGCAGCTGAAAGGCTCGGGAAAGACACCT TATTCACGATCTGGAGATGGGAGGGCCGTGTTGCGCTCTTCGGTCCGGGAGTTCCTGTGC AGCGAGGCCATGCACTATCTGGGTGTTCCCACCAGCAGAGCTGCAAGCCTCATTGTCTCT GATGAACCAGTGTGGAGAGACCAGTTCTATGACGGAAACGTTACGAAGGAGAGAGGAGCT GTCGTTCTTCGCCTTGCCAAGTCATGGTTCCGCATAGGATCCCTAGAGATTCTCACCAGA AGCGGTGAGGTGGATCTCCTCAGGAAACTGTTGGACTTCATTTTGGAAAAATATTTCCCA ACGATACAGTCAAACGATCCCGACAAGTTTTTGGTGTTTTATTCCAAAGTCGTGAACGAG ACGGCACAGCTCGTGGCCCGGTGGATGTCTGTTGGCTTCGCTCATGGTGTGTGCAATACG GACAACTTCAGTTTGCTCTCAGTCACAATCGATTACGGTCCATTTGGTTTCATGGAGTCT TTTGACCCAAGCTTTGTTCCCAACTGGTCTGATGACGAGGGGCGGTACAGCATGGGACAG CAGGCCAACGGCGGCAGGTTCAACCTGGGAAAGCTGGCGGAGGCACTGGGACCCATCCTG AGGCCAGAGCAA // JARO01001490.1:subseq(43248,78521) GeneWise match 43441 50762 196.18 + . JARO01001490.1:subseq(43248,78521)-genewise-prediction-1 JARO01001490.1:subseq(43248,78521) GeneWise cds 43441 43506 0.00 + 0 JARO01001490.1:subseq(43248,78521)-genewise-prediction-1 JARO01001490.1:subseq(43248,78521) GeneWise intron 43507 43595 0.00 + . JARO01001490.1:subseq(43248,78521)-genewise-prediction-1 JARO01001490.1:subseq(43248,78521) GeneWise cds 43596 43660 0.00 + 0 JARO01001490.1:subseq(43248,78521)-genewise-prediction-1 JARO01001490.1:subseq(43248,78521) GeneWise intron 43661 43821 0.00 + . JARO01001490.1:subseq(43248,78521)-genewise-prediction-1 JARO01001490.1:subseq(43248,78521) GeneWise cds 43822 43878 0.00 + 1 JARO01001490.1:subseq(43248,78521)-genewise-prediction-1 JARO01001490.1:subseq(43248,78521) GeneWise intron 43879 44016 0.00 + . JARO01001490.1:subseq(43248,78521)-genewise-prediction-1 JARO01001490.1:subseq(43248,78521) GeneWise cds 44017 44115 0.00 + 1 JARO01001490.1:subseq(43248,78521)-genewise-prediction-1 JARO01001490.1:subseq(43248,78521) GeneWise intron 44116 45360 0.00 + . JARO01001490.1:subseq(43248,78521)-genewise-prediction-1 JARO01001490.1:subseq(43248,78521) GeneWise cds 45361 45428 0.00 + 1 JARO01001490.1:subseq(43248,78521)-genewise-prediction-1 JARO01001490.1:subseq(43248,78521) GeneWise intron 45429 46138 0.00 + . JARO01001490.1:subseq(43248,78521)-genewise-prediction-1 JARO01001490.1:subseq(43248,78521) GeneWise cds 46139 46226 0.00 + 2 JARO01001490.1:subseq(43248,78521)-genewise-prediction-1 JARO01001490.1:subseq(43248,78521) GeneWise intron 46227 48011 0.00 + . JARO01001490.1:subseq(43248,78521)-genewise-prediction-1 JARO01001490.1:subseq(43248,78521) GeneWise cds 48012 48081 0.00 + 1 JARO01001490.1:subseq(43248,78521)-genewise-prediction-1 JARO01001490.1:subseq(43248,78521) GeneWise intron 48082 48956 0.00 + . JARO01001490.1:subseq(43248,78521)-genewise-prediction-1 JARO01001490.1:subseq(43248,78521) GeneWise cds 48957 49029 0.00 + 0 JARO01001490.1:subseq(43248,78521)-genewise-prediction-1 JARO01001490.1:subseq(43248,78521) GeneWise intron 49030 50000 0.00 + . JARO01001490.1:subseq(43248,78521)-genewise-prediction-1 JARO01001490.1:subseq(43248,78521) GeneWise cds 50001 50084 0.00 + 2 JARO01001490.1:subseq(43248,78521)-genewise-prediction-1 JARO01001490.1:subseq(43248,78521) GeneWise intron 50085 50640 0.00 + . JARO01001490.1:subseq(43248,78521)-genewise-prediction-1 JARO01001490.1:subseq(43248,78521) GeneWise cds 50641 50762 0.00 + 2 JARO01001490.1:subseq(43248,78521)-genewise-prediction-1 // JARO01001490.1:subseq(43248,78521)-genewise-prediction-1 JARO01001490.1:subseq(43248,78521) GeneWise cds 50001 50084 0.00 + 2 JARO01001490.1:subseq(43248,78521)-genewise-prediction-1 JARO01001490.1:subseq(43248,78521) GeneWise intron 50085 50640 0.00 + . JARO01001490.1:subseq(43248,78521)-genewise-prediction-1 JARO01001490.1:subseq(43248,78521) GeneWise cds 50641 50741 0.00 + 2 JARO01001490.1:subseq(43248,78521)-genewise-prediction-1 //