genewise output Score 565.01 bits over entire alignment Scores as bits over a synchronous coding model Warning: The bits scores is not probablistically correct for single seqs See WWW help for more info 4 YEYVSPEQLAGFDKYK YSAVDTNPLS YEYV+ EQL+GFDKYK YSAVDTNPLS YEYVTQEQLSGFDKYK YSAVDTNPLS JARO01001505.1:46101 tgtgacgcctgtgataGTGAGTC Intron 1 CAGtagggaacct aaatcaaatcgtaaaa<0-----[46149:50002]-0>agctacactc tatccagggttttgcg ctctcctggc 30 LYVMHPFWNTIVK VFPTWLAPNLITF +YVMHPFWNT+VK ++PTWLAPNLITF VYVMHPFWNTVVK ILPTWLAPNLITF JARO01001505.1:50033 gtgaccttaaggaGTAAACT Intron 2 CAGatcatcgcacaat tattactgactta<0-----[50072:50437]-0>ttccgtccattct atcgcgtgcttgg tacagctctccgc 56 SGFLLVVFNFLLMAYFDPDFYAS +GF+ +V+NF+++A FD DFYAS TGFMFLVLNFVMLALFDFDFYAS A:V[gta] JARO01001505.1:50477 agtatcgcatgatgctgtgttgtGGTGAGTG Intron 3 CAGTA cgttttttattttcttatatacc <1-----[50547:51168]-1> tccgcccgctaggtcctccctca 80 PGHKHVPDWVWIVVGILNFVAYTL G HVP WVW+ G+ NF AYTL QGKTHVPGWVWVAAGVFNFTAYTL D:D[gac] JARO01001505.1:51171 cgaacgcgtgtgggggtatagtacGGTATGTG Intron 4 agacatcggtgtccgttatccact <1-----[51244:54944] ataacgacgggtatcccccggtag 104 GVDGKQARRTNSSTPLGELFDHGLDSWSCVYFVVTVYSIFGRGS GVDGKQARRTNSSTPLGELFDHGLDSW+C++FVVTVYSIFGRG GVDGKQARRTNSSTPLGELFDHGLDSWACIFFVVTVYSIFGRGE JARO01001505.1:54942 TAGACggggacgccaataaccggctgcgcgatgtattggagttatgcgg -1> gtagaacggcacgcctgattaagtaggcgtttttctacttggga tttgagtccccccgaagggtctcgccgcctcttccgccccccag 149 TGVSVFVLYLLLWVVLFSFILSHWEKYNTGILFLPWGYDISQV TGV V LY +LW VLFSFILSHWEKYNTG+LFLPWGYDISQV TGVDVSTLYYILWSVLFSFILSHWEKYNTGVLFLPWGYDISQV JARO01001505.1:55079 aggggtacttacttgctttactctgataaggctcctgtgaacg cgtatcctaattgctttctttcagaaaacgttttcggaatgat ccctgcgccccggcgccccccccgggccctgtcgggcccccag 192 TISFVYIVTAVVGVEAWYEPFLFNFL TIS VYI+TAVVGVEAWY+P+L+NF TISVVYIITAVVGVEAWYKPILWNFH JARO01001505.1:55208 GTGAGCC Intron 5 TAGaatggtaaagggggggttacactatc <0-----[55208:56196]-0>ctcttattccttgtacgaacttgata cctttctagtcgtgaggtacaggcct 218 YRDLFTAMII CALCVTLPMSLLN YRDLFT MI+ CA VTLPMSL N YRDLFTVMIL G:G[ggc] CAFTVTLPMSLYN JARO01001505.1:56275 tagctagaacGGTGAGAC Intron 6 CAGGCtgtagaccaacta agattctttt <1-----[56306:56744]-1> gctctctctgtaa cgcgctggtg tgcagctcgtcct 242 FF SYKNNTLKLNSVYEAMVPLFS + +Y+ +LK S+YEA++P +S VL R:K[aag] AYRRGSLKHGSLYEAFLPFLS JARO01001505.1:56786 gtAAGTACGTG Intron 7 CAGGgtcagtcacgtctggtcctct tt <2-----[56794:57262]-2> cagggctaagctaacttcttc cg gccaccgacccgcgccgccgc 266 PCLLFILSTAWILWSPSDILELHPRVFYFMVGTAFANST P LLFILS+ W+ SPSDIL+ PR+FY+MVGTAFAN T PVLLFILSSLWVHLSPSDILQKQPRIFYLMVGTAFANVT JARO01001505.1:57327 cgcctacttctgcctcagaccacccattcaggagtgaga cttttttcctgtatccgattaaacgttatttgcctcatc aggccctcgggtcccctttgggggcccccggcactctct 305 CQLIVCQMSSTRCPTLNWLLVPLFLV C+LIVCQMS+TRC +WLL+P+ L+ CKLIVCQMSNTRCQPFSWLLLPMALL JARO01001505.1:57444 GTAAGTT Intron 8 CAGtacagtcaaaactcctatccccagcc <0-----[57444:57938]-0>gatttgatgacggactggtttctctt cggcgcggccgctacccggtgcgtgg 331 VLVVNLGVASYVESILLYTLTTAFTLAHIHYGVRV VL+V+ G+ + E+ +LYT T LAH+HYGV V VLLVSSGLVQHSETAVLYTWTAVVLLAHVHYGVSV JARO01001505.1:58017 gccgatgcgccagaggctatagggccgcgctggtg ttttgcgttaagaccttacgccttttcataagtct ggggcatgggctgaggcccgcaggggttcccgctg 366 VKQLSSHFQIYPFSLRKPNSD V+QLS+HF I+ FSL++P+SD VQQLSAHFSIFAFSLKRPSSD JARO01001505.1:58122 GTGAGTT Intron 9 CAGgcctagctaatgttcaacatg <0-----[58122:59001]-0>taatgcatgttctctagcgca ggagctcccctccagggctac // Making a V in phase 1 intron Making a D in phase 1 intron Making a G in phase 1 intron Making a K in phase 2 intron >JARO01001505.1:subseq(4646,100074).pep YEYVTQEQLSGFDKYKYSAVDTNPLSVYVMHPFWNTVVKILPTWLAPNLITFTGFMFLVL NFVMLALFDFDFYASVQGKTHVPGWVWVAAGVFNFTAYTLDGVDGKQARRTNSSTPLGEL FDHGLDSWACIFFVVTVYSIFGRGETGVDVSTLYYILWSVLFSFILSHWEKYNTGVLFLP WGYDISQVTISVVYIITAVVGVEAWYKPILWNFHYRDLFTVMILGCAFTVTLPMSLYNVL KAYRRGSLKHGSLYEAFLPFLSPVLLFILSSLWVHLSPSDILQKQPRIFYLMVGTAFANV TCKLIVCQMSNTRCQPFSWLLLPMALLVLLVSSGLVQHSETAVLYTWTAVVLLAHVHYGV SVVQQLSAHFSIFAFSLKRPSSD // >JARO01001505.1:subseq(4646,100074).[46101:59064].sp TATGAATATGTCACCCAAGAGCAGCTGTCTGGTTTTGATAAGTACAAGTACAGTGCCGTT GACACCAATCCGCTGTCCGTATATGTCATGCACCCGTTTTGGAACACTGTTGTGAAGATT TTACCCACATGGCTCGCTCCCAATCTCATCACGTTCACTGGCTTCATGTTCCTCGTCCTG AACTTTGTAATGTTGGCTCTCTTCGATTTCGACTTCTATGCCTCAGTACAAGGTAAAACA CACGTGCCAGGCTGGGTGTGGGTTGCAGCTGGCGTCTTCAACTTCACGGCGTATACACTG GACGGTGTTGATGGGAAACAGGCTCGCCGCACCAACTCCAGCACGCCACTAGGGGAGCTG TTTGACCATGGCCTGGACAGCTGGGCCTGCATTTTCTTTGTTGTCACCGTGTACTCCATC TTCGGCCGCGGAGAGACCGGCGTCGATGTGTCCACGCTCTACTACATCCTGTGGTCCGTG CTCTTCTCCTTCATCCTCTCCCACTGGGAGAAGTACAACACCGGTGTGCTTTTCCTGCCG TGGGGCTACGACATCAGCCAAGTGACCATCTCTGTTGTTTACATTATAACGGCTGTCGTG GGTGTGGAAGCGTGGTATAAACCCATACTGTGGAACTTCCATTACAGGGACCTGTTCACT GTGATGATTCTGGGCTGTGCGTTCACAGTGACCCTTCCCATGAGTCTCTACAATGTCTTG AAGGCGTACCGCAGAGGCTCCCTGAAACACGGCTCCCTGTACGAGGCCTTCCTGCCCTTC CTGTCCCCAGTGCTGCTCTTCATCCTTTCCTCGCTGTGGGTTCACCTCTCCCCCAGTGAT ATTCTGCAGAAGCAGCCGCGCATCTTCTACCTCATGGTGGGCACAGCCTTTGCCAATGTC ACTTGCAAGCTGATCGTGTGCCAGATGAGCAACACGCGCTGTCAACCCTTCAGCTGGCTG CTTCTGCCCATGGCTCTGCTGGTGCTGCTGGTGAGCTCAGGTCTGGTGCAGCACAGTGAG ACAGCGGTGCTCTACACCTGGACCGCAGTGGTGCTGCTGGCTCATGTCCACTACGGGGTC TCTGTGGTGCAGCAATTGAGCGCTCACTTCAGCATCTTTGCCTTCTCACTGAAGAGGCCC AGTTCAGAC // JARO01001505.1:subseq(4646,100074) GeneWise match 46101 59064 565.01 + . JARO01001505.1:subseq(4646,100074)-genewise-prediction-1 JARO01001505.1:subseq(4646,100074) GeneWise cds 46101 46148 0.00 + 0 JARO01001505.1:subseq(4646,100074)-genewise-prediction-1 JARO01001505.1:subseq(4646,100074) GeneWise intron 46149 50002 0.00 + . JARO01001505.1:subseq(4646,100074)-genewise-prediction-1 JARO01001505.1:subseq(4646,100074) GeneWise cds 50003 50071 0.00 + 0 JARO01001505.1:subseq(4646,100074)-genewise-prediction-1 JARO01001505.1:subseq(4646,100074) GeneWise intron 50072 50437 0.00 + . JARO01001505.1:subseq(4646,100074)-genewise-prediction-1 JARO01001505.1:subseq(4646,100074) GeneWise cds 50438 50546 0.00 + 0 JARO01001505.1:subseq(4646,100074)-genewise-prediction-1 JARO01001505.1:subseq(4646,100074) GeneWise intron 50547 51168 0.00 + . JARO01001505.1:subseq(4646,100074)-genewise-prediction-1 JARO01001505.1:subseq(4646,100074) GeneWise cds 51169 51243 0.00 + 2 JARO01001505.1:subseq(4646,100074)-genewise-prediction-1 JARO01001505.1:subseq(4646,100074) GeneWise intron 51244 54944 0.00 + . JARO01001505.1:subseq(4646,100074)-genewise-prediction-1 JARO01001505.1:subseq(4646,100074) GeneWise cds 54945 55207 0.00 + 2 JARO01001505.1:subseq(4646,100074)-genewise-prediction-1 JARO01001505.1:subseq(4646,100074) GeneWise intron 55208 56196 0.00 + . JARO01001505.1:subseq(4646,100074)-genewise-prediction-1 JARO01001505.1:subseq(4646,100074) GeneWise cds 56197 56305 0.00 + 0 JARO01001505.1:subseq(4646,100074)-genewise-prediction-1 JARO01001505.1:subseq(4646,100074) GeneWise intron 56306 56744 0.00 + . JARO01001505.1:subseq(4646,100074)-genewise-prediction-1 JARO01001505.1:subseq(4646,100074) GeneWise cds 56745 56793 0.00 + 2 JARO01001505.1:subseq(4646,100074)-genewise-prediction-1 JARO01001505.1:subseq(4646,100074) GeneWise intron 56794 57262 0.00 + . JARO01001505.1:subseq(4646,100074)-genewise-prediction-1 JARO01001505.1:subseq(4646,100074) GeneWise cds 57263 57443 0.00 + 1 JARO01001505.1:subseq(4646,100074)-genewise-prediction-1 JARO01001505.1:subseq(4646,100074) GeneWise intron 57444 57938 0.00 + . JARO01001505.1:subseq(4646,100074)-genewise-prediction-1 JARO01001505.1:subseq(4646,100074) GeneWise cds 57939 58121 0.00 + 0 JARO01001505.1:subseq(4646,100074)-genewise-prediction-1 JARO01001505.1:subseq(4646,100074) GeneWise intron 58122 59001 0.00 + . JARO01001505.1:subseq(4646,100074)-genewise-prediction-1 JARO01001505.1:subseq(4646,100074) GeneWise cds 59002 59064 0.00 + 0 JARO01001505.1:subseq(4646,100074)-genewise-prediction-1 //