genewise output Score 822.11 bits over entire alignment Scores as bits over a synchronous coding model Warning: The bits scores is not probablistically correct for single seqs See WWW help for more info 1 MSVRESFNPESYELDKNFRLTRFTELKGTGCKVPQDVLQKLLESLQENH MSVRESFNPESYELDK FRLTRFTELKGTGCKVPQDVLQKLLESLQ+NH MSVRESFNPESYELDKGFRLTRFTELKGTGCKVPQDVLQKLLESLQDNH JARO01010221.1: 9462 atgcgttacgatgcgagtctactagtagagtagccggccattgtccgac tctgactacagaataagtgtcgtcatagcggatcaattaattactaaaa gtcagctctgctggcgtccgcgcagggcaccgcaatgggggggtagctc 50 YQEDEQFLGAVMPRL IGMDTCVI +QEDEQFLG VMPRL IGMDTCVI FQEDEQFLGTVMPRL G:G[ggt] IGMDTCVI JARO01010221.1: 9609 tcgggctcgagacccGGTGAGTG Intron 1 CAGGTagagatga taaaaattgcttcgt <1-----[9655 : 9788]-1> tgtacgtt cggtagtcgtcgtgt ccgtccct 74 PLRHGGLSLVQTTDYIYPIVDDPYMM PLRHGGLSLVQTTDYIYPIVDDPYMM PLRHGGLSLVQTTDYIYPIVDDPYMM JARO01010221.1: 9815 ccacggctcgcaagtatcagggctaaGTAGGAA Intron 2 TAG ctgaggtcttaccaatacttaacatt<0-----[9893 : 9997]-0> agactcgaatgaatctcctgtcttgg 100 GRIACANVLSDLYAMGVTECDNMLMLLGVSNKLTEK GRIACANVLSDLYAMGVTECDNMLMLLG+SNKL++K GRIACANVLSDLYAMGVTECDNMLMLLGISNKLSDK JARO01010221.1: 9998 gcagtgagtagctgaggagtgaacaccgaaaattga ggtcgcattgatactgtcagaatttttgtgaatcaa gttatctaatctccgtcaatctgggtgactcagatg 136 ERDKVMPLVIQGFKDASEEAGTSVTG ERDKVMPL+IQGFKDASEEAGTSVTG ERDKVMPLIIQGFKDASEEAGTSVTG JARO01010221.1:10106 GTAAGTT Intron 3 CAGgagagactaacgtaggtggggatgag <0-----[10106:10591]-0>agaattctttagtaaccaacgcctcg aacaggtaatgtcatataaggagcaa 162 GQTVINPWIVLGGVATTVCQPNEFI GQTV+NPWIVLGGVATTVCQPNEFI GQTVVNPWIVLGGVATTVCQPNEFI M:M[atg] JARO01010221.1:10670 gcaggactagcggggaagtccagtaATGTGAGAA Intron 4 gacttacgtttggtccctgacaatt <2-----[10747:11058] cgtaactgtccatgcatgcaatgcc 187 PDNAVPGDVLVLTKPLGTQVAVAVHQWLDI PDNAVPGDVLVLTKPLGTQVAVAVHQWLDI PDNAVPGDVLVLTKPLGTQVAVAVHQWLDI JARO01010221.1:11056 CAGGcgaggcgggtgtaaccgacgggggccttga -2> caactcgattttcactgcatctctaagtat attccaacggagaacggaaatgtttggatt 218 PEKWNKIKLVVTQEDVELAYQEAMLN PEKWNKIKLVVTQEDVELAYQEAM+N PEKWNKIKLVVTQEDVELAYQEAMMN JARO01010221.1:11150 GTAAGTG Intron 5 CAGcgataaaacggacggggtgtcggaaa <0-----[11150:11350]-0>caagaatatttcaaatatcaaactta agagcacaggggagttggatggtggt 244 MARLNRT AGLMHTFNAHAATDIT MARLNRT AGLMHTFNAHAATDIT MARLNRT A:A[gct] AGLMHTFNAHAATDIT JARO01010221.1:11429 agacaaaGGTATAGA Intron 6 CAGCTggcacatagcggagaa tcgtagc <1-----[11451:11604]-1> cgttactacacccatc ggagcaa taggccctcctctccg 268 GFGILGHAQNLARQQRTEVSFVIHNLPVLAKMAAVSKACGNMFGLMHGT GFGILGHAQNLARQQR+EVSFVIHNLPVLAKMAAVSKACGNMFGLMHGT GFGILGHAQNLARQQRSEVSFVIHNLPVLAKMAAVSKACGNMFGLMHGT JARO01010221.1:11655 gtgacgcgcacgcccaaggttgacatcgcgaagggaagtgaatgcacga gtgttgacaatcgaaggatctttaatcttcatcctgacggattgttagc ctccgctcgcgtggagcggccccccgcggcggtgccgccgcgtgcgccc 317 CPETS GLLICLPREQAARFCAEI CPETS GLLICLPREQAARFCAEI CPETS G:G[ggg] GLLICLPREQAARFCAEI JARO01010221.1:11802 tcgatGGTAAGGA Intron 7 CAGGGgccatcccgcggattgga gcacc <1-----[11818:12032]-1> gtttgtcgaaccgtgcat tgaca gtgtcgggggtcgcccgc 341 KSPKYGEGHQAWIIGIVEKGNRTARIIDKPRIIEVAPQVATQNVNTTPG KSPKYGEGHQAWIIGIVEKGNRTARIIDKPRIIEVAPQVATQNVN TPG KSPKYGEGHQAWIIGIVEKGNRTARIIDKPRIIEVAPQVATQNVNPTPG JARO01010221.1:12089 atcatgggccgtaagaggagacagaaagaccaagggccggacagacacg accaagagaacgttgttaagagccgttaacgttatccatccaatacccg atcgcagccgcgccccggacccgcatccgtgccgggggccagtcccctg 390 ATS TS TTS JARO01010221.1:12236 aat ccc acg // Making a G in phase 1 intron Making a M in phase 2 intron Making a A in phase 1 intron Making a G in phase 1 intron >JARO01010221.1:subseq(1,39741).pep MSVRESFNPESYELDKGFRLTRFTELKGTGCKVPQDVLQKLLESLQDNHFQEDEQFLGTV MPRLGIGMDTCVIPLRHGGLSLVQTTDYIYPIVDDPYMMGRIACANVLSDLYAMGVTECD NMLMLLGISNKLSDKERDKVMPLIIQGFKDASEEAGTSVTGGQTVVNPWIVLGGVATTVC QPNEFIMPDNAVPGDVLVLTKPLGTQVAVAVHQWLDIPEKWNKIKLVVTQEDVELAYQEA MMNMARLNRTAAGLMHTFNAHAATDITGFGILGHAQNLARQQRSEVSFVIHNLPVLAKMA AVSKACGNMFGLMHGTCPETSGGLLICLPREQAARFCAEIKSPKYGEGHQAWIIGIVEKG NRTARIIDKPRIIEVAPQVATQNVNPTPGTTS // >JARO01010221.1:subseq(1,39741).[9462:12244].sp ATGTCTGTCCGAGAGTCCTTTAACCCTGAGAGCTATGAGCTGGACAAGGGTTTCCGCTTG ACCCGGTTCACAGAGTTGAAGGGCACAGGCTGCAAGGTCCCACAAGATGTGCTGCAGAAG TTGTTGGAGTCTCTACAGGACAATCACTTCCAGGAGGATGAACAGTTTCTCGGGACTGTC ATGCCTCGGCTTGGTATCGGCATGGATACCTGCGTCATTCCACTGAGACACGGTGGCCTG TCACTAGTTCAGACAACAGATTACATTTACCCCATTGTGGATGACCCTTATATGATGGGG CGTATTGCATGTGCCAATGTATTAAGTGACCTTTACGCCATGGGTGTCACAGAATGTGAC AATATGCTGATGCTTCTGGGAATCAGTAACAAATTGTCAGATAAGGAAAGAGACAAAGTG ATGCCTTTAATAATTCAGGGTTTCAAAGATGCATCTGAAGAAGCGGGGACATCGGTCACA GGAGGCCAGACTGTAGTAAACCCTTGGATTGTCCTCGGAGGTGTGGCCACAACTGTGTGC CAACCAAATGAGTTCATCATGCCAGATAATGCCGTCCCAGGAGACGTGTTGGTATTGACA AAACCCCTGGGGACACAAGTAGCTGTGGCTGTTCATCAGTGGTTAGATATTCCAGAGAAA TGGAACAAAATCAAACTGGTGGTGACGCAAGAGGATGTTGAGTTGGCATATCAGGAGGCT ATGATGAATATGGCGAGACTGAACAGAACAGCTGCTGGACTGATGCACACCTTCAATGCC CACGCTGCCACTGACATCACGGGCTTTGGCATCCTGGGCCATGCCCAGAACCTGGCTCGG CAGCAAAGGAGCGAGGTGTCCTTCGTCATCCACAACTTGCCCGTGCTGGCCAAGATGGCT GCGGTCAGCAAGGCCTGCGGGAACATGTTTGGGCTCATGCACGGCACCTGTCCGGAAACC TCAGGGGGGCTTCTGATTTGCCTGCCGCGGGAGCAGGCTGCCAGGTTCTGCGCCGAGATC AAATCTCCCAAGTACGGAGAGGGCCACCAGGCCTGGATCATCGGCATCGTGGAGAAAGGC AACCGCACGGCCAGAATTATCGACAAGCCTCGGATCATCGAGGTGGCGCCGCAGGTCGCC ACACAGAATGTCAACCCCACCCCTGGGACAACCTCG // JARO01010221.1:subseq(1,39741) GeneWise match 9462 12244 822.11 + . JARO01010221.1:subseq(1,39741)-genewise-prediction-1 JARO01010221.1:subseq(1,39741) GeneWise cds 9462 9654 0.00 + 0 JARO01010221.1:subseq(1,39741)-genewise-prediction-1 JARO01010221.1:subseq(1,39741) GeneWise intron 9655 9788 0.00 + . JARO01010221.1:subseq(1,39741)-genewise-prediction-1 JARO01010221.1:subseq(1,39741) GeneWise cds 9789 9892 0.00 + 2 JARO01010221.1:subseq(1,39741)-genewise-prediction-1 JARO01010221.1:subseq(1,39741) GeneWise intron 9893 9997 0.00 + . JARO01010221.1:subseq(1,39741)-genewise-prediction-1 JARO01010221.1:subseq(1,39741) GeneWise cds 9998 10105 0.00 + 0 JARO01010221.1:subseq(1,39741)-genewise-prediction-1 JARO01010221.1:subseq(1,39741) GeneWise intron 10106 10591 0.00 + . JARO01010221.1:subseq(1,39741)-genewise-prediction-1 JARO01010221.1:subseq(1,39741) GeneWise cds 10592 10746 0.00 + 0 JARO01010221.1:subseq(1,39741)-genewise-prediction-1 JARO01010221.1:subseq(1,39741) GeneWise intron 10747 11058 0.00 + . JARO01010221.1:subseq(1,39741)-genewise-prediction-1 JARO01010221.1:subseq(1,39741) GeneWise cds 11059 11149 0.00 + 1 JARO01010221.1:subseq(1,39741)-genewise-prediction-1 JARO01010221.1:subseq(1,39741) GeneWise intron 11150 11350 0.00 + . JARO01010221.1:subseq(1,39741)-genewise-prediction-1 JARO01010221.1:subseq(1,39741) GeneWise cds 11351 11450 0.00 + 0 JARO01010221.1:subseq(1,39741)-genewise-prediction-1 JARO01010221.1:subseq(1,39741) GeneWise intron 11451 11604 0.00 + . JARO01010221.1:subseq(1,39741)-genewise-prediction-1 JARO01010221.1:subseq(1,39741) GeneWise cds 11605 11817 0.00 + 2 JARO01010221.1:subseq(1,39741)-genewise-prediction-1 JARO01010221.1:subseq(1,39741) GeneWise intron 11818 12032 0.00 + . JARO01010221.1:subseq(1,39741)-genewise-prediction-1 JARO01010221.1:subseq(1,39741) GeneWise cds 12033 12244 0.00 + 2 JARO01010221.1:subseq(1,39741)-genewise-prediction-1 //