genewise output
Score 212.64 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
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                 559 YCSQMLSKEVDACVTDLLKELVRFQDRMYQKDPVKAKTKRRLVLGLREV 
                     YC+Q+L+KE+D  VT LL+ELVRFQ+R+YQ+DP KAK KRRLV+GLREV 
                     YCNQVLNKEIDESVTLLLQELVRFQERVYQRDPTKAKAKRRLVMGLREV 
JARO01024844.1:  195 ttacgcaagaggagaccccgcgctcgcgtcagcaagagacccgagccgg 
                     agaattaaataagtctttaattgtaagtaagaccacacaggtttgtgat 
                     cccggctgaccacgtaggggggccggcttggcctgcgcgatgcgagtgg 


                 608 LKHLKLKKLKCVIISPNCEKIQSK                          
                      KH+KL K+KCVIISPNCEKIQSK                          
                     TKHMKLHKIKCVIISPNCEKIQSK          G:G[ggt]        
JARO01024844.1:  342 aacaaccaaatgaatcatgaactaGGTGAGGC  Intron 1        
                     caatataatagtttccagaataca <1-----[415  :  963]     
                     cgtggccgcaccccgcctagcgca                          


                 632      GLDDTLHTIIDYACEQNIPFVFALNRKALGRSLNKAVPVSVVGI 
                          GLD+ L+ +I  A EQ IPFVFAL RKALGR +NK VPVSVVGI 
                          GLDEALYNVIAMAREQEIPFVFALGRKALGRCVNKLVPVSVVGI 
JARO01024844.1:  961 CAGGTgcgggttagagagagcgactgtgcgcagtgctgaacgcgaggga 
                     -1>  gtaactaattctcgaaatctttctggactgggtaattctgttgt 
                          tgtgagctcccgcggagtctgtagtcgtgcccccggctcctgcc 


                 677 FSYDGAQ                       DQFHKMVELTVAARQAYKT 
                     F++ GA+                         F+++V LT  AR+AY+  
                     FNFSGAE                       SLFYRLVSLTEEAREAYRE 
JARO01024844.1: 1098 tattgggGTAGCGG  Intron 2   CAGacttacgtcagggcggtag 
                     tatcgca<0-----[1119 : 1632]-0>gttagttctcaacgacaga 
                     tccaacg                       tgccgcggggggctgacga 


                 703 MLENVQQE                                          
                     M+  ++QE                                          
                     MVSALEQE                                          
JARO01024844.1: 1690 agtgcgcg                                          
                     ttcctaaa                                          
                     ggtagggg                                          


//
Making a G in phase 1 intron
>JARO01024844.1:subseq(1,2339).pep
YCNQVLNKEIDESVTLLLQELVRFQERVYQRDPTKAKAKRRLVMGLREVTKHMKLHKIKC
VIISPNCEKIQSKGGLDEALYNVIAMAREQEIPFVFALGRKALGRCVNKLVPVSVVGIFN
FSGAESLFYRLVSLTEEAREAYREMVSALEQE
//
>JARO01024844.1:subseq(1,2339).[195:1713].sp
TACTGCAACCAGGTGCTCAATAAGGAAATCGACGAAAGCGTGACTCTACTGCTGCAGGAG
CTGGTGCGCTTCCAGGAGCGCGTTTATCAGAGGGACCCCACTAAGGCCAAGGCCAAGCGA
CGTCTGGTCATGGGACTGCGTGAGGTGACCAAGCATATGAAGCTCCACAAGATCAAATGC
GTCATCATCTCGCCCAACTGTGAAAAGATCCAGTCCAAAGGTGGTCTGGATGAGGCATTG
TACAATGTCATCGCCATGGCCAGGGAGCAAGAGATTCCCTTTGTGTTTGCACTGGGTCGC
AAGGCTTTGGGCCGCTGCGTCAACAAGCTGGTCCCTGTCAGCGTTGTGGGCATCTTTAAC
TTCTCAGGAGCCGAGAGTCTGTTCTACAGGCTCGTGTCGCTGACGGAGGAGGCCCGTGAG
GCATACAGGGAAATGGTGTCTGCACTGGAGCAGGAG
//
JARO01024844.1:subseq(1,2339)	GeneWise	match	195	1713	212.64	+	.	JARO01024844.1:subseq(1,2339)-genewise-prediction-1
JARO01024844.1:subseq(1,2339)	GeneWise	cds	195	414	0.00	+	0	JARO01024844.1:subseq(1,2339)-genewise-prediction-1
JARO01024844.1:subseq(1,2339)	GeneWise	intron	415	963	0.00	+	.	JARO01024844.1:subseq(1,2339)-genewise-prediction-1
JARO01024844.1:subseq(1,2339)	GeneWise	cds	964	1118	0.00	+	2	JARO01024844.1:subseq(1,2339)-genewise-prediction-1
JARO01024844.1:subseq(1,2339)	GeneWise	intron	1119	1632	0.00	+	.	JARO01024844.1:subseq(1,2339)-genewise-prediction-1
JARO01024844.1:subseq(1,2339)	GeneWise	cds	1633	1713	0.00	+	0	JARO01024844.1:subseq(1,2339)-genewise-prediction-1
//