genewise output Score 312.18 bits over entire alignment Scores as bits over a synchronous coding model Warning: The bits scores is not probablistically correct for single seqs See WWW help for more info 369 KKSQLPVQLDLGGMLTALEKKQHSQHAKQSSKPVVVS KKS++PVQLDLG ML LE+KQ SQ +KQ+ KP+++S KKSKVPVQLDLGNMLAVLEQKQMSQKSKQNPKPIILS JARO01002402.1: 6107 aaaagcgccgcgaacggcgcacatcatacacacaact aagatctatatgattcttaaaatcaacaaacactttc ggcgtcgggcgccggtgagggggcggcggccgtccga 406 VGAVPVLSKECASGERGRRMSQM G +PVL K+ ++ ++ R+ + -:V[gtt] GGGLPVLQKDPSTPKKHPRQVE- JARO01002402.1: 6218 GGTGGTTA Intron 1 CAGTTgggccgtcagctacaaccccgg <1-----[6219 : 6394]-1> gggtcttaaaccccaaacgata ctattcagaccctaaacagaag 429 KTPHNPLDSSAPLMKKGKQREIPKAKKPTSLKK HNPLDS++PL+KKGKQRE+PKAKKPT LK+ RVAHNPLDSTSPLVKKGKQREVPKAKKPTPLKR JARO01002402.1: 6463 aggcactgtaaccgaagacaggcagaacaccac gtcaactaccgcttaagaagatcacaaccctag ggacctactcccggggcggagctaagatgtgaa 462 IILKERQERKQR--LQENAVSPAFTS IILKER+ERK+ L+E + P IILKEREERKRNRLLEERGLLPPAAD JARO01002402.1: 6562 GTGAGAC Intron 2 CAGaacagcggaacacccggcgccccggg <0-----[6562 : 6653]-0>tttaagaagagagttaaggttcccca ccgggagggggctggaggatctgttt 486 DDTQDGESGGDDQFPEQAELSGPEGM E + + E+ SGPCSNEVVVQLESLQLEEIVHNSST D:E[gag] JARO01002402.1: 6732 tgctaaggggccgacctggagcaataGGTGAGGC Intron 3 cgcggaatttatagtataattaagcc <1-----[6811 : 7040] tgctctgggtgcgcgggggcgcctca 512 ELISTPSVEDKSEEPPGTEL--QRDTEASHLAPNHTTFPKIHSR E ++ ++P E+ Q + S L PKIHSR ESMTVQVDLCTQDDPAQAEIGEQPTNDGSSLETALVQRPKIHSR JARO01002402.1: 7038 CAGAGgtaagcggctacggcgcggaggccaaggtttgagcgcccaacac -1> actctatatgcaaaccacatgaaccaagcctaccttagcatagg gcgtaggtttaatctagaatgggacctgctaaacgcgtcacccg 555 RFR YCSQMLSKEVDACVTDLLKE +FR YCSQ+LSKEVD CVT LLKE KFR D:D[gac] YCSQVLSKEVDECVTALLKE JARO01002402.1: 7175 ataGAGTAAGCT Intron 4 CAGCttacgcaaggggtgagccag atg <2-----[7186 : 7731]-2> aggattgaataagtccttaa gca cccgggcgagcgtgtggggg 579 LVRFQDRMYQKDPVKAKTKRRLVLGLREVLKHLKLKKLKCVIISPNCEK LVRFQDR+YQKDP+KA+ KRRLV+GLREVLKHLKL+K+KCV+ISPNCE+ LVRFQDRLYQKDPMKARMKRRLVMGLREVLKHLKLRKVKCVVISPNCER JARO01002402.1: 7793 cgctcgcctcagcaagcaacccgagcaggcaccataagatggatcatgc ttgtaagtaaaactacgtaggtttgtgattaatatgatagtttccagag cgccgccccggccggaaggtctcgccggccgccggagcgtcctccctac 628 IQSK GLDDTLHTIIDYACEQNIP IQSK GLD+ LHTIID EQ++P IQSK G:G[ggt] GLDEALHTIIDTCREQSVP JARO01002402.1: 7940 actaGGTACCCC Intron 5 TAGGTgcgggccaaagatcgcagc taca <1-----[7953 : 9788]-1> gtaactacttacggaagtc cgca tatacctatccgctggtgc 652 FVFALNRKALGRSLNKAVPVSVVGIFSYDGAQ FVFAL+RKALGR +NKAVPVS+VGIF+YDGAQ FVFALSRKALGRCVNKAVPVSLVGIFNYDGAQ JARO01002402.1: 9848 tgtgctcagcgctgaaggcgacggatatgggc tttctcgactgggtaactctgttgttaaagca tctcgaagatcttccgtgaccggcccccttag 684 DQFHKMVELTVAARQAYKTMLENVQQ D +HKM+EL+ AR+ Y+ M+ +++ DLYHKMIELSSEARKTYEEMIATLEK JARO01002402.1: 9944 GTGGGAG Intron 6 CAGgctcaaagcttggaaatggaagatga <0-----[9944 :10203]-0>ataaattatccacgacaaattcctaa cgccagcggaaacggttgagttcgaa // Making a V in phase 1 intron Making a E in phase 1 intron Making a D in phase 2 intron Making a G in phase 1 intron >JARO01002402.1:subseq(1,37503).pep KKSKVPVQLDLGNMLAVLEQKQMSQKSKQNPKPIILSVGGGLPVLQKDPSTPKKHPRQVE RVAHNPLDSTSPLVKKGKQREVPKAKKPTPLKRIILKEREERKRNRLLEERGLLPPAADS GPCSNEVVVQLESLQLEEIVHNSSTEESMTVQVDLCTQDDPAQAEIGEQPTNDGSSLETA LVQRPKIHSRKFRDYCSQVLSKEVDECVTALLKELVRFQDRLYQKDPMKARMKRRLVMGL REVLKHLKLRKVKCVVISPNCERIQSKGGLDEALHTIIDTCREQSVPFVFALSRKALGRC VNKAVPVSLVGIFNYDGAQDLYHKMIELSSEARKTYEEMIATLEK // >JARO01002402.1:subseq(1,37503).[6107:10281].sp AAGAAGAGCAAGGTTCCCGTGCAGCTGGACCTGGGCAACATGCTGGCTGTGCTAGAGCAG AAGCAGATGTCCCAGAAGTCCAAGCAGAACCCCAAGCCTATCATCCTGTCAGTTGGCGGT GGACTTCCTGTCTTACAGAAAGACCCCTCCACTCCAAAAAAACACCCACGGCAAGTAGAG AGGGTGGCACACAACCCTTTAGACTCTACCAGCCCCCTGGTGAAGAAGGGCAAGCAGAGA GAGGTCCCTAAAGCAAAGAAACCTACGCCTCTGAAACGAATCATCCTGAAGGAGCGAGAG GAGAGGAAGCGGAACCGTCTGCTGGAAGAGCGGGGACTTCTCCCTCCGGCTGCTGATTCT GGGCCCTGTAGCAATGAGGTGGTGGTTCAGCTCGAGAGCCTGCAGTTGGAGGAGATCGTG CACAACAGTTCCACAGAGGAGTCCATGACTGTACAGGTGGATCTTTGTACACAAGATGAC CCTGCACAGGCAGAAATTGGGGAGCAGCCAACCAACGATGGGTCCTCTTTAGAAACAGCC CTGGTCCAGCGTCCCAAAATCCACAGCCGGAAGTTCAGAGACTACTGCAGCCAGGTGCTG AGCAAGGAAGTGGACGAGTGTGTGACTGCGCTGCTGAAGGAGCTCGTGCGCTTCCAGGAC CGCCTCTACCAGAAGGACCCCATGAAGGCACGAATGAAGCGTCGCCTTGTCATGGGCCTC AGGGAGGTCCTCAAGCACCTCAAGTTGAGAAAGGTCAAGTGTGTCGTCATTTCCCCCAAC TGTGAACGCATCCAGTCCAAAGGTGGTCTAGATGAAGCCCTCCATACAATTATCGACACG TGCCGTGAGCAGAGTGTGCCCTTTGTCTTTGCCCTGTCACGAAAGGCACTTGGCCGTTGT GTCAACAAGGCTGTGCCAGTCAGCCTGGTGGGCATCTTCAACTACGATGGTGCACAGGAC CTGTACCACAAAATGATCGAGCTGTCATCAGAAGCCAGGAAGACTTATGAGGAAATGATT GCTACCTTGGAAAAA // JARO01002402.1:subseq(1,37503) GeneWise match 6107 10281 314.18 + . JARO01002402.1:subseq(1,37503)-genewise-prediction-1 JARO01002402.1:subseq(1,37503) GeneWise cds 6107 6218 0.00 + 0 JARO01002402.1:subseq(1,37503)-genewise-prediction-1 JARO01002402.1:subseq(1,37503) GeneWise intron 6219 6394 0.00 + . JARO01002402.1:subseq(1,37503)-genewise-prediction-1 JARO01002402.1:subseq(1,37503) GeneWise cds 6395 6561 0.00 + 2 JARO01002402.1:subseq(1,37503)-genewise-prediction-1 JARO01002402.1:subseq(1,37503) GeneWise intron 6562 6653 0.00 + . JARO01002402.1:subseq(1,37503)-genewise-prediction-1 JARO01002402.1:subseq(1,37503) GeneWise cds 6654 6810 0.00 + 0 JARO01002402.1:subseq(1,37503)-genewise-prediction-1 JARO01002402.1:subseq(1,37503) GeneWise intron 6811 7040 0.00 + . JARO01002402.1:subseq(1,37503)-genewise-prediction-1 JARO01002402.1:subseq(1,37503) GeneWise cds 7041 7185 0.00 + 2 JARO01002402.1:subseq(1,37503)-genewise-prediction-1 JARO01002402.1:subseq(1,37503) GeneWise intron 7186 7731 0.00 + . JARO01002402.1:subseq(1,37503)-genewise-prediction-1 JARO01002402.1:subseq(1,37503) GeneWise cds 7732 7952 0.00 + 1 JARO01002402.1:subseq(1,37503)-genewise-prediction-1 JARO01002402.1:subseq(1,37503) GeneWise intron 7953 9788 0.00 + . JARO01002402.1:subseq(1,37503)-genewise-prediction-1 JARO01002402.1:subseq(1,37503) GeneWise cds 9789 9943 0.00 + 2 JARO01002402.1:subseq(1,37503)-genewise-prediction-1 JARO01002402.1:subseq(1,37503) GeneWise intron 9944 10203 0.00 + . JARO01002402.1:subseq(1,37503)-genewise-prediction-1 JARO01002402.1:subseq(1,37503) GeneWise cds 10204 10281 0.00 + 0 JARO01002402.1:subseq(1,37503)-genewise-prediction-1 //