genewise output
Score 175.92 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
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                  44 VSAKHDVNGNRTVPPFPEGLQMVLF---                      
                     ++ KH V+GNRT PPFPEG QM L+                         
                     LAEKHHVSGNRTTPPFPEGTQMALxEEN          G:G[ggt]    
JARO01016003.1:23926 cggaccgagacaacctcggacagctggaGGTTAAAC  Intron 1    
                     tcaaaatggagcccctcagcatcttaaa <1-----[24011:25058] 
                     taggtcctgcaggcgtcgcgagcgNggt                      


                  69      MGCFWGAERKFWRQKGVYSTQVGYSGGYTPNPTYEEVCT      
                          MGCFWGAERKFW +KGVYSTQVGY+GG+TPNPTYEE CT      
                          MGCFWGAERKFWTRKGVYSTQVGYAGGFTPNPTYEETCT      
JARO01016003.1:25056 CAGGTagtttgggaattacaggttacggtgggtacacatggata      
                     -1>  tggtggcagatgcgagtaccatgacggtccaccaaacgc      
                          gttcgacgggcgaggcgcctagcccgacacccccggcca      


                 109                           KTGHTEVVRVVFEPQKIKFSELL 
                                               KTGH EVVRVVF+P ++ +  LL 
                               G:G[ggt]        KTGHAEVVRVVFDPAEVTYENLL 
JARO01016003.1:25178 GGTGAGAC  Intron 2   CAGGTaagcggggcggtgcgggatgacc 
                      <1-----[25179:29231]-1>  acgacattgtttaccatcaaatt 
                                               accccgggcctttccagccgcgc 


                 133 KVFWESHNPTQG                                      
                     +VFWE+H+PTQG                                      
                     RVFWENHDPTQG                                      
JARO01016003.1:29303 cgttgacgcacg                                      
                     gttgaaaaccag                                      
                     gccggccccgat                                      


//
Making a G in phase 1 intron
Making a G in phase 1 intron
>JARO01016003.1:subseq(1,36605).pep
LAEKHHVSGNRTTPPFPEGTQMALxEENGMGCFWGAERKFWTRKGVYSTQVGYAGGFTPN
PTYEETCTGKTGHAEVVRVVFDPAEVTYENLLRVFWENHDPTQG
//
>JARO01016003.1:subseq(1,36605).[23926:29338].sp
CTTGCAGAGAAGCATCACGTCAGTGGGAACCGAACGACGCCCCCGTTTCCCGAGGGCACG
CAAATGGCCCTGTTNGAGGAGAATGGTATGGGTTGTTTCTGGGGAGCCGAGAGGAAGTTC
TGGACACGGAAGGGCGTGTACTCCACTCAAGTGGGCTACGCCGGGGGATTCACACCCAAC
CCCACCTACGAGGAGACCTGCACAGGTAAAACCGGCCACGCCGAGGTGGTGCGCGTCGTT
TTTGATCCCGCCGAAGTGACCTACGAGAACCTGCTCCGGGTCTTCTGGGAGAACCACGAC
CCCACGCAAGGT
//
JARO01016003.1:subseq(1,36605)	GeneWise	match	23926	29338	177.92	+	.	JARO01016003.1:subseq(1,36605)-genewise-prediction-1
JARO01016003.1:subseq(1,36605)	GeneWise	cds	23926	24010	0.00	+	0	JARO01016003.1:subseq(1,36605)-genewise-prediction-1
JARO01016003.1:subseq(1,36605)	GeneWise	intron	24011	25058	0.00	+	.	JARO01016003.1:subseq(1,36605)-genewise-prediction-1
JARO01016003.1:subseq(1,36605)	GeneWise	cds	25059	25178	0.00	+	2	JARO01016003.1:subseq(1,36605)-genewise-prediction-1
JARO01016003.1:subseq(1,36605)	GeneWise	intron	25179	29231	0.00	+	.	JARO01016003.1:subseq(1,36605)-genewise-prediction-1
JARO01016003.1:subseq(1,36605)	GeneWise	cds	29232	29338	0.00	+	2	JARO01016003.1:subseq(1,36605)-genewise-prediction-1
//