genewise output Score 269.08 bits over entire alignment Scores as bits over a synchronous coding model Warning: The bits scores is not probablistically correct for single seqs See WWW help for more info 45 SAKHDVNGNRTVPPFPEGLQMVLF + KH VNG TV PFPEG++MV+F AGKHAVNGRTTVEPFPEGMEMVMF G:G[gga] JARO01011081.1: 2817 ggacggagaaaggctcggagagatGGTGAGCG Intron 1 cgaactaggcctactcagtatttt <1-----[2890 : 2980] aaatgctcgcgggccagcgggcgt 69 MGCFWGAERKFWRQKGVYSTQVGYSGGYTPNPTYEEVCT GCFWGAER++WR GV+STQVGYSGG TPNP Y+EVC+ TGCFWGAERRLWRVPGVFSTQVGYSGGITPNPNYQEVCS JARO01011081.1: 2978 CAGGAagtttgggacctcgcggttacggttggaacacatcggtt -1> cggtggcaggtggtcgttccatgacggtccacaaaatgc gtccggaggtcgggttgcccggcctgccccccccgagta 109 KTGHTEVVRVVFEPQKIKFSELL TGH EVVRVV+ PQ + F +LL G:G[ggt] LTGHAEVVRVVYSPQDVTFEKLL JARO01011081.1: 3100 GGTAGGTT Intron 2 CAGGTcagcggggaggttccggatgacc <1-----[3101 : 4825]-1> tcgacattgttaccaatctaatt aacctggcggcctgatcttggcc 133 KVFWESHNPTQ MRQGNDVGTTYR KVFWESH+PTQ MRQGND GT YR KVFWESHDPTQ G:G[ggt] MRQGNDRGTQYR JARO01011081.1: 4897 agttgacgcacGGTGAGTT Intron 3 CAGGTaccgagcgactc attgagaacca <1-----[4931 : 8953]-1> tgagaaggcaag gccggctccca gggccccccgcc 157 SSIYTNTQEQLEQALQSREEYQK VLT S IYT T +QL+ AL S++ +Q+ L SVIYTYTPQQLQVALGSKQAFQQ ELR JARO01011081.1: 8992 tgatatacccccggcgtacgtccGTATGAG Intron 4 CAGgtc cttacaccaatatctgcaactaa<0-----[9061 :11388]-0>atg gcccccccggcagccgcggccgg ggc 183 EEGFGAITTEITMAKEFYYAEDYHQQYLSKNPDGYCGLGGTGVSCPI +G+G ITTEI A FYYAED HQQYL K P GYCGL GTGVSCPI HKGYGLITTEIREAPPFYYAEDSHQQYLHKVPSGYCGLKGTGVSCPI JARO01011081.1:11398 cagtgcaaagacggcctttgggtccctccagcagttgcagaggatca aagagttccatgaccctaacaacaaaataatcggaggtagcgtggct cgctccacagcaggggccccgtccggcctgccccccccaccggctcc // Making a G in phase 1 intron Making a G in phase 1 intron Making a G in phase 1 intron >JARO01011081.1:subseq(1,22073).pep AGKHAVNGRTTVEPFPEGMEMVMFGTGCFWGAERRLWRVPGVFSTQVGYSGGITPNPNYQ EVCSGLTGHAEVVRVVYSPQDVTFEKLLKVFWESHDPTQGMRQGNDRGTQYRSVIYTYTP QQLQVALGSKQAFQQELRHKGYGLITTEIREAPPFYYAEDSHQQYLHKVPSGYCGLKGTG VSCPI // >JARO01011081.1:subseq(1,22073).[2817:11538].sp GCAGGAAAACATGCGGTCAATGGCAGGACCACGGTGGAGCCCTTCCCAGAGGGCATGGAG ATGGTCATGTTTGGAACGGGTTGCTTCTGGGGGGCAGAGAGGCGTCTCTGGCGGGTGCCT GGTGTGTTCTCCACCCAGGTGGGCTACTCTGGGGGCATCACCCCCAACCCCAACTACCAG GAAGTGTGTTCAGGTCTAACAGGCCACGCTGAGGTGGTCAGGGTGGTCTACTCTCCGCAA GATGTCACTTTTGAGAAGCTCCTCAAGGTCTTCTGGGAGAGCCATGACCCCACCCAAGGT ATGCGGCAGGGCAACGACCGCGGCACCCAGTACCGCTCGGTCATCTACACCTACACCCCC CAGCAGCTCCAAGTGGCCCTCGGGTCCAAGCAGGCCTTCCAGCAGGAGTTGCGCCACAAG GGCTATGGCCTCATAACCACAGAGATCCGAGAGGCGCCGCCGTTCTACTACGCCGAGGAT TCCCACCAGCAGTACCTCCATAAGGTCCCCAGCGGCTACTGCGGCCTCAAAGGCACCGGG GTGAGCTGTCCCATC // JARO01011081.1:subseq(1,22073) GeneWise match 2817 11538 269.08 + . JARO01011081.1:subseq(1,22073)-genewise-prediction-1 JARO01011081.1:subseq(1,22073) GeneWise cds 2817 2889 0.00 + 0 JARO01011081.1:subseq(1,22073)-genewise-prediction-1 JARO01011081.1:subseq(1,22073) GeneWise intron 2890 2980 0.00 + . JARO01011081.1:subseq(1,22073)-genewise-prediction-1 JARO01011081.1:subseq(1,22073) GeneWise cds 2981 3100 0.00 + 2 JARO01011081.1:subseq(1,22073)-genewise-prediction-1 JARO01011081.1:subseq(1,22073) GeneWise intron 3101 4825 0.00 + . JARO01011081.1:subseq(1,22073)-genewise-prediction-1 JARO01011081.1:subseq(1,22073) GeneWise cds 4826 4930 0.00 + 2 JARO01011081.1:subseq(1,22073)-genewise-prediction-1 JARO01011081.1:subseq(1,22073) GeneWise intron 4931 8953 0.00 + . JARO01011081.1:subseq(1,22073)-genewise-prediction-1 JARO01011081.1:subseq(1,22073) GeneWise cds 8954 9060 0.00 + 2 JARO01011081.1:subseq(1,22073)-genewise-prediction-1 JARO01011081.1:subseq(1,22073) GeneWise intron 9061 11388 0.00 + . JARO01011081.1:subseq(1,22073)-genewise-prediction-1 JARO01011081.1:subseq(1,22073) GeneWise cds 11389 11538 0.00 + 0 JARO01011081.1:subseq(1,22073)-genewise-prediction-1 //