genewise output Score 207.27 bits over entire alignment Scores as bits over a synchronous coding model Warning: The bits scores is not probablistically correct for single seqs See WWW help for more info 1 MAANSVYDFTVETLEEKSVSLDIFRGKVLLIMNVATFXGST--Q M S+YDF+VE L+ VSL +R KVLLI+NVATFXGST Q MTEMSIYDFSVEALDGLPVSLGSYRDKVLLIVNVATFXGSTVGQ JARO01001523.1:12789 aagatatgtagggcggccgtcgttagagccagaggattgtaggc tcatctaatgtactagtctctgcagaatttttatcctggcctga gaggcccttcggcgcctctgcctcacgggctacgctcagcgaag 43 YHRMNALMDMYGGQRFTVLGFPCNQF YH++NAL + YG FT+LGFPCNQF YHQLNALAEKYGDLNFTILGFPCNQF JARO01001523.1:12921 GTAATGT Intron 1 CAGtcccagcggatggcataacgtctact <0-----[12921:13076]-0>aaatactcaaagatatcttgtcgaat ccagtactggcccccccctatctcgt 69 GLQSP ENHETLNVLQHVRPGSGF GLQSP ENHETLN L+ VRPG GF GLQSP G:E[gag] ENHETLNSLRCVRPGGGF JARO01001523.1:13155 gcctcGGTAAGAT Intron 2 CAGAGgacgacattatgacgggt gtacc <1-----[13171:14138]-1> aaaactactggtgcgggt ccgct actacctaggtagttatc 93 LPKFPIFSRIEVNGSDEDPLYAYLK E +PKFPIF ++EVNG +EDPL+ YLK + IPKFPIFGKVEVNGLNEDPLFTYLK D JARO01001523.1:14195 acatcatgagggagcaggcctatcaGTTAGTG Intron 3 CAGg tcatcttgatatagtaaacttcata<0-----[14270:14412]-0>a tagtaacggcattaatattcctccg t 119 SLPFVNPVIGDIRKLYWSPIKANDVRWNFEKFLITADGRPYKR +LPFVNP+IG+++K YWSP++ ND+RWNFEKFLI ADG PY+R TLPFVNPLIGEMKKFYWSPLRVNDIRWNFEKFLIRADGVPYRR JARO01001523.1:14416 atctgaccaggaaattttccagagactatgatcacggggctaa ctcttacttgataatagcctgtaatggataatttgcagtcagg cgctacacttgggaccgaacgctctcgctggcgagataatcgg // Making a E in phase 1 intron >JARO01001523.1:subseq(1,63196).pep MTEMSIYDFSVEALDGLPVSLGSYRDKVLLIVNVATFXGSTVGQYHQLNALAEKYGDLNF TILGFPCNQFGLQSPEENHETLNSLRCVRPGGGFIPKFPIFGKVEVNGLNEDPLFTYLKD TLPFVNPLIGEMKKFYWSPLRVNDIRWNFEKFLIRADGVPYRR // >JARO01001523.1:subseq(1,63196).[12789:14544].sp ATGACAGAGATGTCCATCTACGATTTTAGCGTGGAGGCCCTGGACGGCCTTCCCGTTTCG CTCGGCTCTTACAGAGACAAGGTGCTGCTCATTGTAAACGTGGCCACTTTCTGAGGGTCC ACGGTAGGACAGTACCACCAACTGAATGCACTCGCTGAGAAGTACGGCGACCTCAACTTC ACCATCCTTGGATTTCCCTGTAACCAGTTTGGCCTCCAGTCCCCTGAGGAAAACCATGAA ACCCTCAATTCATTGAGGTGTGTAAGGCCTGGTGGAGGTTTCATTCCAAAGTTTCCAATA TTCGGGAAGGTCGAAGTTAATGGACTAAATGAAGATCCTCTCTTCACTTACCTCAAGGAT ACCTTGCCCTTTGTAAACCCACTCATTGGTGAGATGAAGAAATTCTACTGGTCACCACTC AGGGTCAATGACATTCGCTGGAACTTTGAGAAGTTCCTGATACGGGCAGATGGAGTACCT TACAGGAGG // JARO01001523.1:subseq(1,63196) GeneWise match 12789 14544 208.27 + . JARO01001523.1:subseq(1,63196)-genewise-prediction-1 JARO01001523.1:subseq(1,63196) GeneWise cds 12789 12920 0.00 + 0 JARO01001523.1:subseq(1,63196)-genewise-prediction-1 JARO01001523.1:subseq(1,63196) GeneWise intron 12921 13076 0.00 + . JARO01001523.1:subseq(1,63196)-genewise-prediction-1 JARO01001523.1:subseq(1,63196) GeneWise cds 13077 13170 0.00 + 0 JARO01001523.1:subseq(1,63196)-genewise-prediction-1 JARO01001523.1:subseq(1,63196) GeneWise intron 13171 14138 0.00 + . JARO01001523.1:subseq(1,63196)-genewise-prediction-1 JARO01001523.1:subseq(1,63196) GeneWise cds 14139 14269 0.00 + 2 JARO01001523.1:subseq(1,63196)-genewise-prediction-1 JARO01001523.1:subseq(1,63196) GeneWise intron 14270 14412 0.00 + . JARO01001523.1:subseq(1,63196)-genewise-prediction-1 JARO01001523.1:subseq(1,63196) GeneWise cds 14413 14544 0.00 + 0 JARO01001523.1:subseq(1,63196)-genewise-prediction-1 //