genewise output
Score 329.60 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
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                   1 MEALGGYPSKSSASRAGLFKVLLSVALCMGSLYLLQNKLSKSRKTKDFY 
                     ME L GYP KSS  +A  + + LS ALC+G+L+LLQ K+ K RK KDFY 
                     MEPLLGYPVKSSVPKARKLILFLSTALCVGTLFLLQTKVFKPRKAKDFY 
JARO01002658.1:16555 agcccgtcgattgcagcacactcaagttggatttccaagtacaagagtt 
                     tacttgactacctcacgatttttgcctgtgcttttacattacgacaata 
                     ggcgaacccggggcgtgggcccctggatggtgtaaacaacacgaggcct 


                  50 SYEVKDARGRTVSLEKYRGK                       VSLVVN 
                     S+EV+D RGRTVSLEKYRGK                        SLVVN 
                     SFEVRDIRGRTVSLEKYRGK                       ASLVVN 
JARO01002658.1:16702 ttggcgacgaagtcgatcgaGTAAGTT  Intron 1   CAGgtcgga 
                     ctatgatgggctctaaagga<0-----[16762:16984]-0>ccttta 
                     ccgggtcgggtttggacaaa                       atgtcc 


                  76 VASGSELTEQSYRALQELHRELGTSHFNVLAFPCSQYGDTESGTSREIE 
                     VAS  E  E+SYRALQELHRELGTSHFNVLAFPC Q+GDTE G++R+IE 
                     VASHCEHAERSYRALQELHRELGTSHFNVLAFPCGQFGDTEPGSNRDIE 
JARO01002658.1:17003 ggactgcggcttcgccgcccgcgatctagcgtctgctggagcgaacgag 
                     tcgagaacagcagctaatagatgccatattctcggatgacacggagata 
                     ggtccgcggctccgggggccggcgacccgcgcccagcccgggccccccg 


                 125 AFAKSNYGVTFPIFNKIKIMGSEAEPAFRFLT                  
                     AF KSN+GVTFPIF+K+KIMGSE +PAF+++T                  
                     AFVKSNFGVTFPIFSKVKIMGSEPDPAFKYIT                  
JARO01002658.1:17150 gtgatatggatcataagaaagtgcgcgtataa                  
                     cttacatgtctcttgatattgcacacctaatc                  
                     tccgcccgctcccccgtaagcggatatcgccg                  


                 157                           SVQKIPKWNFWKFLVSPEGQVVR 
                                               SVQK+PKWNFWKFLV+PEG+VVR 
                               D:D[gat]        SVQKMPKWNFWKFLVNPEGKVVR 
JARO01002658.1:17246 GGTGTGTG  Intron 2   CAGATtgcaacatattatcgacggaggc 
                      <1-----[17247:17849]-1>  ctaatcagatgatttacagattg 
                                               acgggaggccggtggcaacaggg 


                 181 FWKPEEPVSDIRKEATTLVRNIILKKRQEL                    
                     +WK EE +  IR+EA  LVR IILKKR EL                    
                     YWKTEERMEQIRQEAAALVREIILKKRVEL                    
JARO01002658.1:17921 ttaaggcagcaccggggcgcgaacaaaggc                    
                     agacaagtaatgaacccttgatttaagtat                    
                     cggcgaagggtgggaaaagagccggaggac                    


//
Making a D in phase 1 intron
>JARO01002658.1:subseq(1,34983).pep
MEPLLGYPVKSSVPKARKLILFLSTALCVGTLFLLQTKVFKPRKAKDFYSFEVRDIRGRT
VSLEKYRGKASLVVNVASHCEHAERSYRALQELHRELGTSHFNVLAFPCGQFGDTEPGSN
RDIEAFVKSNFGVTFPIFSKVKIMGSEPDPAFKYITDSVQKMPKWNFWKFLVNPEGKVVR
YWKTEERMEQIRQEAAALVREIILKKRVEL
//
>JARO01002658.1:subseq(1,34983).[16555:18010].sp
ATGGAGCCCCTGCTAGGATACCCCGTCAAGTCGTCGGTGCCCAAGGCTCGGAAGCTGATC
CTCTTCCTCAGTACGGCGTTATGTGTGGGGACTTTGTTTTTACTACAAACCAAAGTATTC
AAACCCAGGAAAGCGAAGGACTTCTATTCCTTCGAGGTGCGGGATATCCGGGGGAGGACT
GTTTCTCTGGAGAAATACCGAGGAAAAGCATCTCTGGTTGTCAACGTGGCGAGTCACTGC
GAGCACGCGGAGCGCTCTTACCGCGCGCTGCAGGAGCTGCACCGCGAGCTGGGCACGTCA
CACTTCAACGTGCTCGCGTTCCCCTGCGGACAGTTCGGCGACACGGAGCCGGGCAGCAAC
CGCGACATCGAGGCTTTCGTCAAGTCCAACTTCGGGGTCACTTTCCCCATCTTCAGCAAG
GTTAAAATAATGGGCTCGGAGCCAGATCCAGCTTTCAAGTACATCACGGATTCAGTCCAG
AAGATGCCAAAGTGGAACTTCTGGAAGTTTCTGGTGAACCCAGAAGGCAAAGTGGTGCGG
TACTGGAAGACCGAGGAACGAATGGAGCAGATTCGGCAGGAGGCAGCAGCACTAGTGCGA
GAGATCATCCTGAAGAAAAGGGTGGAACTC
//
JARO01002658.1:subseq(1,34983)	GeneWise	match	16555	18010	329.60	+	.	JARO01002658.1:subseq(1,34983)-genewise-prediction-1
JARO01002658.1:subseq(1,34983)	GeneWise	cds	16555	16761	0.00	+	0	JARO01002658.1:subseq(1,34983)-genewise-prediction-1
JARO01002658.1:subseq(1,34983)	GeneWise	intron	16762	16984	0.00	+	.	JARO01002658.1:subseq(1,34983)-genewise-prediction-1
JARO01002658.1:subseq(1,34983)	GeneWise	cds	16985	17246	0.00	+	0	JARO01002658.1:subseq(1,34983)-genewise-prediction-1
JARO01002658.1:subseq(1,34983)	GeneWise	intron	17247	17849	0.00	+	.	JARO01002658.1:subseq(1,34983)-genewise-prediction-1
JARO01002658.1:subseq(1,34983)	GeneWise	cds	17850	18010	0.00	+	2	JARO01002658.1:subseq(1,34983)-genewise-prediction-1
//