genewise output
Score 145.00 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
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                  47 SIKKMPELYNFLMERWAL                          HNLEY 
                     SIKKMP+L  FLMERWAL                          HNLEY 
                     SIKKMPQLLEFLMERWAL           Y:Y[tat]       HNLEY 
JARO01011017.1: 5714 taaaaccccgtcagctgcTAGTATCCT  Intron 1   AAGTcatgt 
                     ctaatcattatttaggct  <2-----[5770 : 6194]-2> aataa 
                     ttgggaactgtgggggaa                          ttagt 


                  71 DSGEDKNPRLIFYNDKDEEVK                       VVPVK 
                     DSGE+KNPRL+FYN KDE VK                        V VK 
                     DSGEEKNPRLLFYNSKDEVVK                       TVSVK 
JARO01011017.1: 6211 gtgggaaccccttataggggaGTAAGAA  Intron 2   CAGagtga 
                     acgaaaacgtttaacaaatta<0-----[6274 : 6644]-0>ctcta 
                     tagaaatcattcctaatatgg                       ttagg 


                  97 KMKADEISSLLDSLGFYKRSEKGEEVPEEFKHFPLRAPRDEL        
                     KMKADEIS+LLDSLGFY+RS+KGEEVP+EF+HFPL  PRDEL        
                     KMKADEISNLLDSLGFYRRSKKGEEVPKEFQHFPLWTPRDEL        
JARO01011017.1: 6660 aaagggaaatcgttgttaataaggggcagtcctcctacaggc        
                     atacaatgattactgtaggcaagaatcaataatctgccgaat        
                     ggaatgctcgactaaccagcggaaggtgacgttcggatgtgt        


//
Making a Y in phase 2 intron
>JARO01011017.1:subseq(1,11722).pep
SIKKMPQLLEFLMERWALYHNLEYDSGEEKNPRLLFYNSKDEVVKTVSVKKMKADEISNL
LDSLGFYRRSKKGEEVPKEFQHFPLWTPRDEL
//
>JARO01011017.1:subseq(1,11722).[5714:6785].sp
TCTATTAAGAAGATGCCACAACTCCTTGAGTTTCTGATGGAGCGGTGGGCACTATATCAT
AATTTAGAGTATGATTCAGGGGAAGAAAAAAATCCCCGACTTCTTTTCTACAATTCAAAA
GATGAAGTTGTGAAGACTGTTTCAGTGAAGAAGATGAAAGCAGATGAGATCAGTAACTTG
CTAGACTCTTTAGGATTCTACAGAAGGTCCAAGAAGGGAGAAGAGGTGCCTAAGGAATTC
CAGCATTTTCCCCTGTGGACACCTAGGGATGAGCTT
//
JARO01011017.1:subseq(1,11722)	GeneWise	match	5714	6785	145.00	+	.	JARO01011017.1:subseq(1,11722)-genewise-prediction-1
JARO01011017.1:subseq(1,11722)	GeneWise	cds	5714	5769	0.00	+	0	JARO01011017.1:subseq(1,11722)-genewise-prediction-1
JARO01011017.1:subseq(1,11722)	GeneWise	intron	5770	6194	0.00	+	.	JARO01011017.1:subseq(1,11722)-genewise-prediction-1
JARO01011017.1:subseq(1,11722)	GeneWise	cds	6195	6273	0.00	+	1	JARO01011017.1:subseq(1,11722)-genewise-prediction-1
JARO01011017.1:subseq(1,11722)	GeneWise	intron	6274	6644	0.00	+	.	JARO01011017.1:subseq(1,11722)-genewise-prediction-1
JARO01011017.1:subseq(1,11722)	GeneWise	cds	6645	6785	0.00	+	0	JARO01011017.1:subseq(1,11722)-genewise-prediction-1
//