Total number of SECIS elements predicted: 1
Number of known selenoproteins predicted: 1
You can download here these output files:
or scroll down to inspect each result.
Selenoprotein id: 1 Category: known selenoprotein
Protein prediction
Predicted by: exonerate Blastx evalue: 5e-16
Query protein: gi|929517999|ref|XP_005495861.2| PREDICTED: methionine-R-sulfoxide reductase B1 [Zonotrichia albicollis]
Positions on query: 65-105 Query length: 112
Target name: JARO01016450.1:subseq_1,5340_
Positions on target: 4560-4682 Strand: -
Query LKVTCGKCGNGLGHEFLNDGPKRGQSRFUIFSSSLKFVPKG
|/| ||||||||||||/||||/ ||||||||||||||||||
Target LQVLCGKCGNGLGHEFINDGPEEGQSRFUIFSSSLKFVPKG
ccgctgatgagcgcgtaaggcgggctcttataatcatgcag
tattggaggagtgaattaagcaagacgtgttggctattcag
tgtctgatctagctgtatcaagaagtccaatccgggtatat
*
SECIS prediction Predicted by: Infernal (score 14.61)
Covels score: 15.64
Free Energy of structure: -23.5
Target name: JARO01016450.1:subseq_1,5340_
Positions on target: 4209-4282 Strand: -
Distance between candidate CDS and SECIS: 277
Distance between Sec-UGA and SECIS: 313
SECIS grade: A
SEQ GAGGUGUGGAUGGCUUAUGAAGCGUGUUGGACAAAGCUUCGUUCAGCACACAGAUGUGUCCGUGACCACACCGG
SS ..(((((((........{[[{({(((((((((........)))))))))})}]]}..........)))))))..
