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Total number of SECIS elements predicted: 1
Number of known selenoproteins predicted: 1
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Selenoprotein id: 1         Category: known selenoprotein
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Protein prediction
Predicted by: exonerate Blastx evalue: 3e-20
Query protein: gi|658131713|emb|CCX35039.1| selenoprotein Pb [Oncorhynchus mykiss]
Positions on query: 2-185 Query length: 279

Target name: JARO01001739.1:subseq_1,52605_
Positions on target: 5308-5525,3227-3439,2489-2603 Strand: -
Has a Redox Box!


  Query   MQGLLTLWLCAALPGLLCASPLLVEGDNDASKICKPAPHWEIKGHGAPMKELLGNVVVLALLKASUHFCR
          |||| |||  / || || || | /||| | ||||/| | ||| |  |||/| ||||||/|||/||| || 
  Target  MQGLGTLWF-SVLPALLTASSLFIEGDRDPSKICEPPPQWEIDGR-APMQEHLGNVVVVALLQASUQFCL
          acgcgattt-tgccgctagttttagggagctaatgcccctgaggc-gcacgccgagggggcccgatcttc
          tagtgctgt-cttccttcccctttagagaccatgacccagatagg-cctaaatgattttcttacggatgt
          ggtcgcggc-gcgatcgcatggctgccgccggccacaggggccct-ccggacggctgggcggaccagctc
                                                                           *    
  
  Query   TQASK <---Intron---> LGGLRDKLLRSNLTDVSFLIVNEREAQSRAMYWELKRRAPPGIPVYQQA
           ||/  <   1868bp   > /| ||/||||  | /||/||||///  ||  | |||||||  |||||||
  Target  QQAAN                MGVLRNKLLRYGLRNVSYLIVNQQDISSRRQYQELKRRAPKEIPVYQQA
          ccgga                aggtcaactatgccagatcagaccgattacctcgcaaagcagacgtccg
          aacca                tgttgaattgagtgatgatttaaaatccggaaaataggccaatctaaac
          ggcc                tgacagcgcggtcggcgctgcccggccgcacgcggggggaaggcaccagc
                                                                                
  
  Query   PLQDDVWEALDGDKDDFLVYDR <---Intron---> CGRLTFHIVLPYSFLHYPYIEAAVRATYHKDI
          | | /||/ |/| |||||/||| <   623bp    > ||||||||||||/|| |||/|||/  /| |||
  Target  PRQQNVWKLLNGAKDDFLIYDR                CGRLTFHIVLPYTFLQYPYVEAAIWVSYRKDI
          ccccagtaccaggaggtcatgc                tgacatcagcctatcctctggggatgttcaga
          cgaaatgattagcaaatttaag                gggtctatttcacttaacatacctgtcagaat
          taggtcggcgcccatcccaccg                cgagccctctgcccggccccggccggcccgcc
                                                                                
  
  Query   CGNCTV
          ||||/|
  Target  CGNCSV
          tgattg
          ggagct
          cccccg
                
  
SECIS prediction
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SECIS image
Predicted by: Infernal (score 25.7)
Covels score: 28.45
Free Energy of structure: -11.1
Target name: JARO01001739.1:subseq_1,52605_
Positions on target: 794-876 Strand: -
Distance between candidate CDS and SECIS: 1612
Distance between Sec-UGA and SECIS: 1966
SECIS grade: A

  SEQ  UCUCCUGUCCUCUGCUUGAAAUGAAAUCUGUAGUUUAAACCGCACUCAGGAGUCUACAGACGGAUGCCCAGCGAGACAAGAGU
  SS   .((({((((............{[[[{((((((({((..............))})))))))}]]]}.........))))}))).