Seblastian output

Selenoprotein id: 1 Category: known selenoprotein

Protein prediction
Predicted by: exonerate Blastx evalue: 8e-05
Query protein: gi|146261167|ref|NP_001078947.1| selenoprotein I [Xenopus laevis]
Positions on query: 1-400 Query length: 401

Target name: JARO01001505.1:subseq_4646,100074_
Positions on target: 46095-46148,50003-50071,50438-50546,51169-51243,54945-55207,56197-56305,56745-56793,57263-57443,57939-58121,59002-59106 Strand: +

  Query   MAWEYVSPEQLAGFDKYK <---Intron---> YSAVDTNPLSLYVMHPFWNSIVR <---Intron--
          / /|||/ |||/|||||| <   3854bp   > ||||||||||/||||||||//|/ <   366bp
  Target  LLYEYVTQEQLSGFDKYK                YSAVDTNPLSVYVMHPFWNTVVK
          cctgtgacgcctgtgata                tagggaacctgtgaccttaagga
          ttaaatcaaatcgtaaaa                agctacactctattactgactta
          cttatccagggttttgcg                ctctcctggcatcgcgtgcttgg


  Query   -> FFPTWLAPNLITFSGFLLLVFTFFLMAFFDPGFYASA <---Intron---> PGQVHVPNWVWILA
           >   |||||||||||/||/ ||  | //| ||  ||||  <   622bp    >  |/ ||| |||/ |
  Target     ILPTWLAPNLITFTGFMFLVLNFVMLALFDFDFYASV                QGKTHVPGWVWVAA
             atcatcgcacaatagtatcgcatgatgctgtgttgtg                cgaacgcgtgtggg
             ttccgtccattctcgttttttattttcttatatacc                tagacatcggtgtcc
             tacagctctccgctccgcccgctaggtcctccctca                aataacgacgggtat


  Query   GLLNFTSYTLD <---Intron---> GVDGKQARRTNSSTPLGELFDHGLDSWACIFFVVTVYSIFGRG
          |/ |||/|||| <   3701bp   > |||||||||||||||||||||||||||||||||||||||||||
  Target  GVFNFTAYTLD                GVDGKQARRTNSSTPLGELFDHGLDSWACIFFVVTVYSIFGRG
          ggtatagtacg                ggggacgccaataaccggctgcgcgatgtattggagttatgcg
          gttatccacta                gtagaacggcacgcctgattaagtaggcgtttttctacttggg
          cccccggtagc                tttgagtccccccgaagggtctcgccgcctcttccgcccccca


  Query   ETGVSVLVLYLLLWVVLFSFILSHWEKYNTGILFLPWGYDLSQVT <---Intron---> ISCVYLVTA
          |||| |  || /|| ||||||||||||||||/||||||||/|||| <   989bp    > || ||//||
  Target  ETGVDVSTLYYILWSVLFSFILSHWEKYNTGVLFLPWGYDISQVT                ISVVYIITA
          gaggggtacttacttgctttactctgataaggctcctgtgaacga                atggtaaag
          acgtatcctaattgctttctttcagaaaacgttttcggaatgatc                tcttattcc
          gccctgcgccccggcgccccccccgggccctgtcgggcccccag                cctttctagt


  Query   MVGVEAWYTPAFFNILYRDLFTSMIVGC <---Intron---> ALCVTLPMSLYNVFKAY <---Intr
          /||||||| |  /|  |||||| ||/|| <   439bp    > |  |||||||||| ||| <   469b
  Target  VVGVEAWYKPILWNFHYRDLFTVMILGC                AFTVTLPMSLYNVLKAY
          ggggggttacactatctagctagaacgt                gtagaccaactagtagt
          ttgtacgaacttgataagattcttttg                gctctctctgtaattac
          cgtgaggtacaggcctcgcgctggtgc                tgcagctcgtcctcggg


  Query   on---> RDNTLKHGSLYEAMLPIISPVLLFILTTFWIFASPSNILEQHPRLFYFMVGTTFANITCQL <
          p    > |  /||||||||| || /||||||||// |/  |||/||// ||/|| |||| |||/||/| <
  Target         RRGSLKHGSLYEAFLPFLSPVLLFILSSLWVHLSPSDILQKQPRIFYLMVGTAFANVTCKL
                 cagtcacgtctggtcctctcgcctacttctgcctcagaccacccattcaggagtgagatac
                agggctaagctaacttcttccttttttcctgtatccgattaaacgttatttgcctcatcga
                ccaccgacccgcgccgccgcaggccctcgggtcccctttgggggcccccggcactctctcg


  Query   ---Intron---> IVCQMSNTRCQPLSWLLLPLTLAVGVSVSGVDSQYETLALVMVTVLVTVAHIHYGV
             495bp    > |||||||||||| ||||||/ | | /  ||/    ||  |   | /| /||/||||
  Target                IVCQMSNTRCQPFSWLLLPMALLVLLVSSGLVQHSETAVLYTWTAVVLLAHVHYGV
                        agtcaaaactcctatccccagccgccgatgcgccagaggctatagggccgcgctgg
                       tttgatgacggactggtttctcttttttgcgttaagaccttacgccttttcataagt
                       gcgcggccgctacccggtgcgtggggggcatgggctgaggcccgcaggggttcccgc


  Query   NVVNQ <---Intron---> LSKHFNILPFSLKKPNTDULEEEEKIGLQSAVV
          /|| | <   880bp    > || ||/|  ||||/|//||| ||||/|||/| |
  Target  SVVQQ                LSAHFSIFAFSLKRPSSDUL-EEEKVGLQAAEV
          tggcc                tagctaatgttcaacatgtc-gggaggccgggg
          cttaa                tgcatgttctctagcgcagt-aaaatgtaccat
          tggga                gctcccctccagggctacaa-gggactgggggg
                                                 *

SECIS prediction

Predicted by: Infernal (score 31.63)
Covels score: 30.07
Free Energy of structure: -14.6
Target name: JARO01001505.1:subseq_4646,100074_
Positions on target: 60029-60102 Strand: +
Distance between candidate CDS and SECIS: 922
Distance between Sec-UGA and SECIS: 961
SECIS grade: A

SEQ UUAGUUUGAGCUUGAAUGAAGAGUAUAACUCAAACCCUAUUUUGGACCAGUUAUACUCUGAAGGAACAAGCUUU
SS ..((((((........([[(((((((((((..................)))))))))))]])....))))))..

Output page