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Total number of SECIS elements predicted: 1
Number of known selenoproteins predicted: 1
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Selenoprotein id: 1         Category: known selenoprotein
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Protein prediction
Predicted by: exonerate Blastx evalue: 6e-21
Query protein: gi|225008493|gb|ACN78879.1| glutathione peroxidase 4 [Anguilla japonica]
Positions on query: 1-176 Query length: 186

Target name: JARO01002300.1:subseq_1,53581_
Positions on target: 4394-4447,3889-3983,3435-3579,2970-3121,2816-2840,2369-2428 Strand: -


  Query   MRSFLTSSVLFSFLLQSV <---Intron---> AAQ-EDWQKAKTIYEFSAKDIDGNEVSLEKYR <--
          /  || |||||| |||// <   410bp    > /|/ /||||| /||/|||||||| |||||||| <  
  Target  LMHFLASSVLFSVLLQTM                SAEVQDWQKATSIYDFSAKDIDGKEVSLEKYR    
          cactcgttgcttgcccaa                tgggcgtcagatatgttgagaggaggttgatc    
          ttattccctttctttact                ccataagaaccctaatccaatagaatctaaag    
          cgtcatctgtcgtgggtg                tgggacggaggctcccccactccaaccgagc     
                                                                                
  
  Query   -Intron---> GFLCIITNVASKUGKTPVNYSQFAQMHAKYAERGLRILAFPSNQFGKQE <---Intr
           309bp    > | /||| |||||| ||||||||||/||| |||/|| ||||||||||/|| <   313b
  Target              GKVCIIVNVASKUSKTPVNYSQFAKMHATYAEKGLCILAFPSNQFGRQE         
                      gagtaagaggtataaacgattctgaacgatggagttacgtctactgacg         
                      gatgtttatccaggacctaacatcataccacaagtgttctccaatgga          
                     gtatcatccaccaacggcacctgtgggccgctgataccgccaccgtcag          
                                  *                                             
  
  Query   on---> PGTEEQIKKFAQSYNAEFDLFSKIDVNGPDAHPLWKWLKEQPNGKGSLGNY <---Intron-
          p    > |||| |||/||/||/|||||| |||||| /|||||||||||| |||/ ||  <   129bp  
  Target         PGTEAQIKEFAKSYDAEFDLFGKIDVNGEEAHPLWKWLKEQPKGKGTFGNN            
                 cgaggcaagtgattgggtgctgaaggaggggccctatcagccagagatgaa            
                acgcacataatcacaacatattgatatagaacactgagtaaacagagctgaa            
                agcagtgtggtcgcctggcccctaccgcaggccgtgggcaggagcaggtgc             
                                                                                
  
  Query   --> IKWNFTKFL <---Intron---> IDREGKVVKRYSPLQDPS
            > ||||||||| <   387bp    > |||||/| |||||| |||
  Target      IKWNFTKFL                IDREGQVAKRYSPLDDPS
              aatataatc                agcggcggaattccggca
              tagatcat                ttagagatcagacctaacg
             ccagtccgt                ctcaaaatgagtcagttac
                                                         
  
SECIS prediction
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SECIS image
Predicted by: Infernal (score 23.44)
Covels score: 28.96
Free Energy of structure: -13.9
Target name: JARO01002300.1:subseq_1,53581_
Positions on target: 1300-1377 Strand: -
Distance between candidate CDS and SECIS: 991
Distance between Sec-UGA and SECIS: 1333
SECIS grade: A

  SEQ  UCUCGUCCAAGAUCAGUGACGGCCUGUCCGCAAACCUGCCUGGCGGAGCUGACAGACCUGAUGACCCCCUGCGUGCAA
  SS   ...((({((.......{[[{(({((((({((................))})))))}))}]]}.......))})))...