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Total number of SECIS elements predicted: 1
Number of known selenoproteins predicted: 1
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Selenoprotein id: 1         Category: known selenoprotein
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Protein prediction
Predicted by: exonerate Blastx evalue: 3e-57
Query protein: gi|884968810|ref|XP_010879862.2| PREDICTED: glutathione peroxidase 1-like [Esox lucius]
Positions on query: 16-190 Query length: 192

Target name: JARO01007473.1:subseq_1,32304_
Positions on target: 32118-32300,31585-31926 Strand: -


  Query   LLTGEPFNFASLQNKVVLIENVASLUGTTTRDYTQMNELHERYADKGLVILGVPCNQFGHQ <---Intr
          |/||| |/|/||/ |||||||||||||||||||||||||  ||||||||/||||||||||| <   191b
  Target  LVTGELFSFSSLRGKVVLIENVASLUGTTTRDYTQMNELQARYADKGLVVLGVPCNQFGHQ         
          cgaggctatttcagaggcagaggtctgaaaagtacaagccgctggagcggtggctactgcc         
          ttcgattgtcctggattttaatcctggcccgaacataatacgacaagttttgtcgaatgaa         
          gccggcctcctagcaggccgcggtcaagccgcccggcggggccccggccgggtcccgcacg         
                                   *                                            
  
  Query   on---> ENCKNEEILMSLKYVRPGNGFEPKFQLLEKVDVNGKDAHPLFVYLKEKLPFPSDEATALMNDP
          p    > ||||||||| |||||||||||||||||||| ||||||||||||/||/|||||||//|/|/|||
  Target         ENCKNEEILSSLKYVRPGNGFEPKFQLLEKADVNGKDAHPLFVFLKKKLPFPSDDSTSLINDP
                 gataaggacatcatgccgagtgcatcctgagggagaggccttgtcaaacctcaggtatcaagc
                 aagaaaattgctaatgcgagtacatattaacatagaacactttttaaatctcgaacccttaac
                 gctgtggcccccgcctagcctgcgcggggaatgcggcctggcgccggggtccccccgccaccc
                                                                                
  
  Query   KCIIWSPVCRNDISWNFEKFLIGPDGEPFKRYSRSFLTSNIEGDIKKLLDM
          | |||||||||||/|||||||||||||||||||| ||||/|| ||/||| /
  Target  KHIIWSPVCRNDIAWNFEKFLIGPDGEPFKRYSRCFLTSHIEADIQKLLSL
          acaatacgtcagagtatgatcagcgggctactaattcaacagggacaccac
          aattggctggaatcgataatttgcagactagagggttcgatacataattgt
          gcccgccgtgtcccgccggcccgttagccgcccgtccccccgcccggcctg
                                                             
  
SECIS prediction
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SECIS image
Predicted by: Infernal (score 21.79)
Covels score: 20.7
Free Energy of structure: -12.5
Target name: JARO01007473.1:subseq_1,32304_
Positions on target: 31383-31457 Strand: -
Distance between candidate CDS and SECIS: 127
Distance between Sec-UGA and SECIS: 574
SECIS grade: A

  SEQ  UGUUUUGACUCUUAAUCUAUGGAGAUUUCCCUUGAAAUCUGUGUGAGAGGGAUGUCUGAUGAAAAGGUAAAAGUC
  SS   .((((([(((.........{[{(((({((((((.............))))))}))))}]}.....)))]))))).