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Total number of SECIS elements predicted: 1
Number of known selenoproteins predicted: 1
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Selenoprotein id: 1         Category: known selenoprotein
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Protein prediction
Predicted by: exonerate Blastx evalue: 4e-27
Query protein: gi|237930378|gb|ACR33822.1| glutathione peroxidase 4b [Cyprinus carpio]
Positions on query: 1-161 Query length: 166

Target name: JARO01010167.1:subseq_19334,95761_
Positions on target: 50280-50377,50000-50144,49320-49471,48396-48420,48085-48147 Strand: -


  Query   MCAQANDWQSAKSIYEFSAKDIDGNEVSLEKYR <---Intron---> GYVCIITNVASKUGKTPVNYT
             ||//|  ||/|||||||||||| ||||||| <   135bp    > |/|||||||||||||||||||
  Target  QATQADNWHQAKTIYEFSAKDIDGNLVSLEKYR                GFVCIITNVASKUGKTPVNYT
          cgacggatccgaaatgttgagaggacgtcgata                gtgtaaaaggtatgaacgata
          accacaagaacactaatccaatagattctaaag                gttgttcatccaggacctaac
          gcggcctgcacactcgctcacccgcgctagac                gttcctcccgctaacgccactt
                                                                       *        
  
  Query   QLAAMHATYAEKGLRILGFPCNQFGKQE <---Intron---> PGTEAEIKEFAKGYKAEFDLFSKIEV
          | | || ||||||||||||||||||/|| <   528bp    > |||| ||||||||| | |||||||/|
  Target  QFAKMHETYAEKGLRILGFPCNQFGQQE                PGTEEEIKEFAKGYNANFDLFSKIDV
          ctgaacgatggagtcacgtctactgccg                cgagggaagtgagtagatgctaaagg
          atcataacacaagtgttgtcgaatgaa                acgcaaataatcagaacatattgatat
          gtgggcggctggtaccgcccccgtcag                aaccgggcggtgagctgccccctactc
                                                                                
  
  Query   NGDGAHPLWKWMKEQPKGRGTLGNN <---Intron---> IKWNFTKFL <---Intron---> INRE
          ||| |||||/||||||/|/|||||  <   899bp    > ||||||||| <   248bp    > |/||
  Target  NGDNAHPLWQWMKEQPRGKGTLGNK                IKWNFTKFL                IDRE
          aggagccctctaagcccgagacgaa                aatataatc                agcg
          agaacactgagtaaacggagctgaa                tagatcat                ttaga
          cgctccgggggggggataaatgac                acggtccgt                ctccg
                                                                                
  
  Query   GQVVKRYGPMDDPSV
          | ||||| |/|||||
  Target  GHVVKRYSPLDDPSV
          gcggaattccggcag
          gattagacctaacgt
          ctggggccagttccg
                         
  
SECIS prediction
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SECIS image
Predicted by: Infernal (score 31.56)
Covels score: 30.96
Free Energy of structure: -14.0
Target name: JARO01010167.1:subseq_19334,95761_
Positions on target: 47717-47791 Strand: -
Distance between candidate CDS and SECIS: 293
Distance between Sec-UGA and SECIS: 638
SECIS grade: A

  SEQ  CAACCCCAGAUCUGUGAUGGCCUGUCUUCAAACCCGCGUGGCGGACUGGACUGGCCUGAUGACUUCUUCGUGCAC
  SS   ...({({((.....{[[{(((({((((....................))))}))))}]]}......))})})...