Seblastian output

Selenoprotein id: 1 Category: known selenoprotein

Protein prediction
Predicted by: exonerate Blastx evalue: 4e-26
Query protein: gi|929114772|ref|XP_014068814.1| PREDICTED: glutathione peroxidase 3-like [Salmo salar]
Positions on query: 31-225 Query length: 229

Target name: JARO01010169.1:subseq_1,20553_
Positions on target: 9298-9448,9061-9178,8310-8409,6672-6887 Strand: -

  Query   VCDPSKDGTIYNYKAKTLNGSRSVSLSEYMGKTVLFINVATYUGLTFQYLE <---Intron---> LNA
          ||||   ||||/| | |||||| /  /|| ||||||/||||||||| |||| <   119bp    > |||
  Target  VCDPKVTGTIYDYGAVTLNGSRYMPFNEYRGKTVLFVNVATYUGLTLQYLE                LNA
          gtgcagagaatgtgggacagactactagtagaagctgaggattgcacctcg                cag
          tgacatcgctaaagctctagggatctaaaggacttttatccaggtctaat                atac
          gcccaggcccccctggcgccctcgcccacgcgggccccgcccaagccgcc                ggta
                                                    *

  Query   LHEEMKDYGFTILGFPSNQFGKQEPGDNHEILATLKH <---Intron---> VRPGNGFVPNFLLFQRG
          ||||/|| |||||||| ||||||||| / |||/ | | <   651bp    > |||||||/|||/|||/|
  Target  LHEELKDNGFTILGFPCNQFGKQEPGSDQEILSGLMH                VRPGNGFLPNFVLFQKG
          ccggcagagtaacgtctactgacgcgagcgattgcac                gccgagtccatgttcag
          taaataaagtcttgtcgaatgaaacggaaattcgtt                atgcgagttcattttaag
          acggcgctgccccctaccataagatgtcggcggccg                cccgatgtttccggcgga


  Query   DVNGNTEQAVYTFLKNS <---Intron---> CPPVGDSFGNPTNRLFWEPLKINDIKWNFEKFLVGPD
          ||||  || |||||||| <   1422bp   > |||||/|||||| ||||||||/|||||||||||||||
  Target  DVNGLNEQKVYTFLKNS                CPPVGESFGNPTGRLFWEPLKVNDIKWNFEKFLVGPD
          ggagcagcagtatcaat                tccgggatgacagccttgccagagaatatgatcggcg
          atagtaaaatacttaa                cgcctgagtgaccggttgactataatagataatttgca
          tgcattaagcctcggt                gctttagcttccccgccggccgccccggctggccggct


  Query   GKPVMRWFPRVPVSEVREDILKYFRQLFSQSTQ
          ||||||||||| ||/|| |||/||  /  |  |
  Target  GKPVMRWFPRVSVSDVRADILRYFSLVHQQQQQ
          gacgacttcagagtggaggaccttacgcccccc
          gacttggtcgtgtcatgcattgatgttaaaaaa
          agccgcgcagccccccacccgcccctccggggg

SECIS prediction

Predicted by: Infernal (score 24.4)
Covels score: 26.84
Free Energy of structure: -25.4
Target name: JARO01010169.1:subseq_1,20553_
Positions on target: 6451-6522 Strand: -
Distance between candidate CDS and SECIS: 149
Distance between Sec-UGA and SECIS: 605
SECIS grade: A

SEQ CUGGUGUCGUUUAUGACGGGGAGGCUCGAAAGCAGCAAUCCUGCUGAGCCUGACCUGAAAGUGCGGCUCCCC
SS ..(({(((((...([[{(([{(((((((................)))))))}]))}]])...)))))}))..

Output page