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Total number of SECIS elements predicted: 1
Number of known selenoproteins predicted: 1
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Selenoprotein id: 1         Category: known selenoprotein
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Protein prediction
Predicted by: exonerate Blastx evalue: e-107
Query protein: gi|831318861|ref|XP_012692195.1| PREDICTED: type III iodothyronine deiodinase [Clupea harengus]
Positions on query: 1-260 Query length: 260

Target name: JARO01012711.1:subseq_1,43791_
Positions on target: 26284-26913,26118-26255 Strand: -


  Query   MKTIRALKNAVICLILLPRFLVAAIMLWFLDFLCV-RKIVFKMRENEGSADDPPLCISDSNRMFSLGSLK
          //|/| /||  /||/|||||||||//|| |||||/ ||// |||| /|  ||||/|/||||||||  |||
  Target  IQTVRLIKNIAVCLVLLPRFLVAALVLWLLDFLCIRRKVLLKMREQDGGPDDPPVCVSDSNRMFSWESLK
          acagacaaaaggtcgcccctcgggcgctccgtctacaagccaacgcgggcggccgtgtgtacatatgtca
          tactgttaatctgttttcgtttcctttgttattgtggatttatgaaaggcaacctgtcacagttggacta
          catgggcgcccgccgggccccgcgcgggcctcgccgggggcgggggcgtccccggcccccccgccgggcg
                                                                                
  
  Query   AVWHGHKLDFFKSAHLGHEAPNTEVVQLRDRKSSRILDYAKGKRPLILNFGSCTUPPFMTRLKAFQRVIN
          |||||||||||||||||/ |||||||// ||  | |||/|/ |||||||||||||||||||||||||// 
  Target  AVWHGHKLDFFKSAHLGYAAPNTEVVRIADRARSCILDFARAKRPLILNFGSCTUPPFMTRLKAFQRLVG
          ggtcgcacgttatgccgtggcaagggcaggcgcatacgtgcgacccacatgatatcctaaccagtcccgg
          ctgagaatattaccatgacccacattgtcagcgggttatcgcagctttatgggcgccttcgtactagttg
          cggcccggcccgggcgacggcctatggcgccgccccgcctcggggcccccccccatgcggctggcgccgc
                                                                *               
  
  Query   QYADIADSVLVYIEEAHPSDGWVSSDAPYQIPQHRCLEDRLKAAELMNQEVPGCVVVADSMDNSSNAAYG
          || |||||/|||||||||||||||||||||||/|||||||||||/||  |||||/||||/|||/||||||
  Target  QYTDIADSLLVYIEEAHPSDGWVSSDAPYQIPKHRCLEDRLKAAQLMKLEVPGCLVVADNMDNASNAAYG
          ctagaggtccgtagggcctggtgatggctcacacctcggacaggccaacggcgtcggggaagagtaggtg
          aacatcactttataacaccaggtgcaccaatcaaggtaagtaccattatatcggtttcaataaccaccag
          gcgccgccgcgccaggcgcccggcgcgccgccgcccggcggagggcggcggcctcggcccgccgccggcn
                                                                                
  
  Query    <---Intron---> AYFDRLYILQDSKVVYQGGRGPEGYRISELRNWLDQYRHSIENSRNIVIHI
           <    28bp    >      |||| / |||||||||||||/||||| |||/||/|/ |||//|||/
  Target                  -----LYILHEGKVVYQGGRGPEGYKISELRTWLDRYRNSVRNSRSVVIHV
                          -----ctaccggaggtcggagcggtaatgcaatcgctaaagcatatggacg
                          -----tattaagattaaggggcagaatcatgcgtagagagtgacgctttat
                          -----cccctgcggctacgggcgacgccgggcgccccgctgctcacggccg
                                                                             
  
SECIS prediction
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SECIS image
Predicted by: Infernal (score 24.41)
Covels score: 25.03
Free Energy of structure: -20.7
Target name: JARO01012711.1:subseq_1,43791_
Positions on target: 25553-25634 Strand: -
Distance between candidate CDS and SECIS: 483
Distance between Sec-UGA and SECIS: 876
SECIS grade: A

  SEQ  UACUCCAGUGUAGUUGUGAAGUUCGGUUUUUAAAGGGUUCCCGACCAGAAAACUGAUACUGAUGUCGUCUGAUACUGGAGUA
  SS   (((((((((((.....{[[((((((((((((................))))))))).)))]]}........)))))))))))