------- SECIS element -- id:1 -- grade:A ----
 Chromosome = KN906069.1:subseq_1296973,100071_ Strand = + Positions = 55794 - 55867
 Found by:  Infernal (score=14.49) Covels (score=16.62)
 Stem2 length = 9   Apical loop length = 17   Insertion in stem2 = 0, 0
 Free Energy = -10.7

         ..(((((((.......(((((((((((((((...............)))))))))))))))........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc
         .({({({(((--....{[[{(((({[[(((.................)))]]}))))}]]}..--...)))})})}).
 target  UUCCGAACGC--UUCAUGACGGGAAAAGUUAAAACGCCACCAGGCGAGGCGGCUCCCAGAUAA--ACUGCGAUGGUGU
                         ****          ^^^                        ****                 

------- SECIS element -- id:2 -- grade:B ----
 Chromosome = KN906069.1:subseq_1296973,100071_ Strand = + Positions = 77494 - 77566
 Found by:  Infernal (score=13.36) Covels (score=0.94)
 Stem2 length = 8   Apical loop length = 15   Insertion in stem2 = 0, 1
 Free Energy = -6.1

         ..(((((((.......(((((((((((((((...............))))))))).))))))........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggccagg-cCuGAUGuuuuuucaugaccggc
         .(((((((........{[[{(((((({((.............----..))})))).))}]]}..--.....))))))).
 target  AUGAGUAUACCUUUCAUGAAGCAAGAUGGGCAGGGAAAGAUU----UACCUUCUUUGCCGAUAU--UACCAAUAUUUGC
                         ****                                      ****                 

------- SECIS element -- id:3 -- grade:B ----
 Chromosome = KN906069.1:subseq_1296973,100071_ Strand = - Positions = 18758 - 18672
 Found by:  Infernal (score=10.41)
 Stem2 length = 12   Apical loop length = 22   Insertion in stem2 = 0, 0
 Free Energy = -24.7

         ..(((((((.........(((((((((((((((........................)))))))))))))))........)))))))..
 model   uucggucaugcg--UuaAUGAcGgccuggcccuAAAcC---------cuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc
         ..(((((((.........([{{(((((((((((((((................)))))))))))))))}}])..--....)))))))..
 target  CGUGUUCGUCACCCGAUGUGGAGUUCACGAACGGAAGCAACAUUUUUCUGAACUUUCUGUUCGUGAACCGAAUU--GUUCGCGAACAGA
                           ****            ^^                                ****                 

------- SECIS element -- id:4 -- grade:B ----
 Chromosome = KN906069.1:subseq_1296973,100071_ Strand = + Positions = 96471 - 96545
 Found by:  Infernal (score=10.28) Covels (score=9.14)
 Stem2 length = 9   Apical loop length = 17   Insertion in stem2 = 0, 1
 Free Energy = -4.6

         ..(((((((.......(((((((((((((((...............))))))).)))))))).........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggcca-ggcCuGAUGuuu-uuucaugaccggc
         ....(((((---(...{[[{((((({((((.................))))}).))))}]]}.....-.-))))))....
 target  CCGCGUUUU---AAAAUGAUGUCCUACAUUAAACAGCCUCACUAUUCAGUGAAUGGGCUGACAUUAG-C-UGGAACAGGA
                         ****          ^^^                         ****