_________________________________.______________________._________________________________________________________________________________
_|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| |       knownSP        |  secis_index:1     SeB_exonerate category:QUE_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_
_________________________________|______________________|_________________________________________________________________________________

 Blastx evalue: 3e-23
 Query name: gi|755243018|ref|NP_001291701.1| phospholipid hydroperoxide glutathione peroxidase, mitochondrial [Xenopus (Silurana) tropicalis]
 Query range: 27-196  (total 196)

 Target: /var/www/seblastian_output/301165777/tempfiles/temptarget.fasta
 Chromosome: KN906249.1:subseq_759658,100095_ Strand: +
 Positions:
 -Exon 1  49997        50094
 -Exon 2  51538        51682
 -Exon 3  55019        55170
 -Exon 4  56725        56749
 -Exon 5  56826        56885
 -Exon 6  58237        58266

 Redox box: no

Query   MCAQVADWKAAKTIYEFSAVDIDGNEVSLEKYR <---Intron---> GYVCIIVNVASKUGKTPVNYTQLVELHAKYAEKGLRILGFPCNQFGKQE <
         ||/|/||| ||||||||| || || ||||||| <   1443bp   > |/||||||||||||||||||||| |/||/|||||| ||||||||||||| <
Target  QCAEVSDWKNAKTIYEFSATDIAGNFVSLEKYR                GFVCIIVNVASKUGKTPVNYTQLAEMHARYAEKGLHILGFPCNQFGKQE  
        ctgggagtaagaaatgttgagaggatgtcgata                gtgtaagaggtatgaacgataccggacgatggagtcacgtctactgacg  
        agcatgagaacactaatcccatcgattctaaag                gttgtttatccaggacctaacatcatacgacaagtattgtcgaatgaa   
        gtcggtcggtggcttactttcttctctcggac                gctccctctaataaaaaaacctgtaagccattgatacccgtcctgtagg   
                                                                     *                                      

Query   ---Intron---> PGDEAQIKDFAASYKVEFDMFSKIEVNGDGAHPLWKWMKEQPKGHGTLGNA <---Intron---> IKWNFTKFL <---Intro
           3336bp   > |||||||||||||| |/||||||||||||||||||||||||||| |||||| <   1554bp   > ||||||||| <    76bp
Target                PGDEAQIKDFAASYNVKFDMFSKIEVNGDGAHPLWKWMKEQPKGRGTLGNA                IKWNFTKFL          
                      cggggcaagtggttagatgataaaggaggggccttataagccagcgacgag                aatataatc          
                     acgaacataatcccaatatattgatatagagcactgagtaaacagggctgac                tagatcat           
                     atgtatatattgacctagtcgccgtgccattctcggagggggtaagttgat                atagtcagt           
                                                                                                            

Query   n---> INREGAVVKRFSPMEDPVVI <---Intron---> EKDLPNLL
            > |/||| /||||||||||||| <   1351bp   > |||||  |
Target        IDREGLIVKRFSPMEDPVVI                EKDLPKYL
              agcggtagaatacaggcgga                gagtcatc
             ttagagtttagtgctaacttt                aaatcaat
             ctctgggtaaatccgatatca                ggtacatt
                                                          
 Sequence until next stop: 
TAG
 * 

 Distance CDS-SECIS: 42 ; UGA-SECIS: 414

------- SECIS element -- id:1 -- grade:A ----
 Chromosome = KN906249.1:subseq_759658,100095_ Strand = + Positions = 58309 - 58382
 Found by:  Infernal (score=20.2) Covels (score=23.83)
 Stem2 length = 9   Apical loop length = 13   Insertion in stem2 = 0, 0
 Free Energy = -15.5

         ..(((((((.......(((((((((((((((................)))))))))))))))............)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcC-cuuuuuggggcgggccaggcCuGAUGuu---u-uuucaugaccggc
         ....({(((---....([[(((({((((((..........-----...))))))}))))]])........-...)))})....
 target  UCAAUUCAC---AGAAUGAUGGUAUGCUUCAAAACCGUGA-----GGGGGAGCAAACCAGAAGGUGUUCU-GGCGUGCACCUG
                         ****          ^^^                         ****