------- SECIS element -- id:1 -- grade:A ----
 Chromosome = KN907016.1:subseq_494381,56419_ Strand = - Positions = 46858 - 46792
 Found by:  Infernal (score=20.75) Covels (score=17.74)
 Stem2 length = 12   Apical loop length = 9   Insertion in stem2 = 0, 0
 Free Energy = -15.3

         ..(((((((.......(((((((((((((((................)))))))))))))))........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcC-cuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc
         ..(({((((---....([[{((((((((((((........-----.))))))))))))}]])----....))))}))..
 target  GACUAAUAC---UAGAUGACUGUAUUCUUUUAAAUCCAUA-----AUGGAAGGGUACAAGAA----UGUUGUAUCAGGA
                         ****            ^^                        ****                 

------- SECIS element -- id:2 -- grade:B ----
 Chromosome = KN907016.1:subseq_494381,56419_ Strand = - Positions = 55283 - 55244
 Found by:  Infernal (score=10.58)
 Stem2 length = 11   Apical loop length = 12   Insertion in stem2 = 0, 0
 Free Energy = -16.6

         ..(((((((.......(((((((((((((((...............)))))))))))))))........)))))))..
 model   uccgggcaugcgUuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuuuuuucaugcccggc
         -----------------[[((((((((((((.....---.......))))))))))))]]------------------
 target  -----------------GAAAACCAGCCGAAAAUCU---UACGAUAUUCGGCUGGUUUGA------------------
                          ***           ^^                        ***                  

------- SECIS element -- id:3 -- grade:B ----
 Chromosome = KN907016.1:subseq_494381,56419_ Strand = + Positions = 50252 - 50311
 Found by:  Infernal (score=10.26)
 Stem2 length = 7   Apical loop length = 11   Insertion in stem2 = 0, 0
 Free Energy = -11.8

         ..(((((((.......(((((((((((.......................)))))))))))........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccgAAAcCcuuuuuggggugggccaggcCuGAUGuuuuuucaugaccggc
         (((((((((.--....([[{(((((((...........------------)))))))}]])----....)))))))))
 target  UUUUUGGAAG--AGAGUGAAACCAGGUUCAAAGCCGUU------------ACCUGGUCGAA----CGUAUUUUAAGGA
                         ****         ^^^                         ****