
genewise output
Score 19.29 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SPP00000074_2.0  220 DLFTAMIIGCAL                                      
                     D+F+ +I+GC L                                      
                     DIFSPLILGCGL                                      
KN909114.1:subs11625 gattccatgtgc                                      
                     attcctttgggt                                      
                     ctttaatagtcc                                      


//
>KN909114.1:subseq(0,50188).pep
DIFSPLILGCGL
//
>KN909114.1:subseq(0,50188).[11625:11660].sp
GACATTTTTTCTCCACTAATTTTAGGGTGTGGCCTC
//
KN909114.1:subseq(0,50188)	GeneWise	match	11625	11660	19.29	+	.	KN909114.1:subseq(0,50188)-genewise-prediction-1
KN909114.1:subseq(0,50188)	GeneWise	cds	11625	11660	0.00	+	0	KN909114.1:subseq(0,50188)-genewise-prediction-1
//

genewise output
Score 601.63 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SPP00000074_2.0    4 YEYVSPEQLAGFDKYK                       YSAVDTNPLS 
                     +EYV+ EQL+GFD+YK                       YSAVDTNPLS 
                     WEYVTAEQLSGFDRYK                       YSAVDTNPLS 
KN909114.1:sub-41127 tgtgaggccagtgctaGTGGGTG  Intron 1   CAGtagggaacct 
                     gaatccaatggtagaa<0-----[41079:18965]-0>agctacactc 
                     gatcccggcccctctg                       ccggcctccc 


SPP00000074_2.0   30 LYVMHPFWNTIVK                       VFPTWLAPNLITF 
                     LYVMHPFWN IVK                        +PTWLAPNLITF 
                     LYVMHPFWNFIVK                       FLPTWLAPNLITF 
KN909114.1:sub-18934 ctgaccttatagaGTGAGTA  Intron 2   CAGttcatcgcacaat 
                     tattactgattta<0-----[18895:15543]-0>ttccgtccattct 
                     cttgcgcgccaaa                       tacaggtctcctc 


SPP00000074_2.0   56 SGFLLVVFNFLLMAYFDPDFYAS                           
                     SGFLL+VFNFL+MA+FD DFYAS                           
                     SGFLLLVFNFLMMAFFDSDFYAS          A:A[gca]         
KN909114.1:sub-15503 agttctgtatcaagttgtgttgtGGTATGTT  Intron 3   TAGCA 
                     ggttttttattttcttacatacc <1-----[15433:14655]-1>   
                     ctcggacctcggggcttccccgt                           


SPP00000074_2.0   80 PGHKHVPDWVWIVVGILNFVAYTL                          
                     PGH+HVP WVWIV G++NF AYTL                          
                     PGHEHVPSWVWIVAGLINFTAYTL          D:D[gac]        
KN909114.1:sub-14652 cgcgcgcatgtagggcaatagtacGGTGAGTC  Intron 4        
                     cgaaatcggtgttcgttatccact <1-----[14579:14134]     
                     attactccgggaacagcccaccaa                          


SPP00000074_2.0  104      GVDGKQARRTNSSTPLGELFDHGLDSWSCVYFVVTVYSIFGRGS 
                          GVDGKQARRTNSSTPLGELFDHGLDSW+C+YFVVTVYSIFGRG  
                          GVDGKQARRTNSSTPLGELFDHGLDSWACIYFVVTVYSIFGRGV 
KN909114.1:sub-14136 CAGACggggacgcaaataaccggctgcgcgatgtattggagttatgcgg 
                     -1>  gtagaacggcacgcctgattaagtaggcgtatttctacttgggt 
                          agccggccacccctcgaagtccggccgcccctggggccccgcgg 


SPP00000074_2.0  149 TGVSVFVLYLLLWVVLFSFILSHWEKYNTGILFLPWGYDISQV       
                     TGVSV+VLYLLLWVVLFSFILSHWEKYNTGILFLPWGYD+SQV       
                     TGVSVLVLYLLLWVVLFSFILSHWEKYNTGILFLPWGYDLSQV       
KN909114.1:sub-13999 aggagcgctccctggctttactctgataagactcctgtgcacg       
                     cgtgttttatttgttttctttcagaaaacgttttcggaatgat       
                     tgcccgctcccggcgcccccgatggacccgcccgcgatcccag       


SPP00000074_2.0  192                        TISFVYIVTAVVGVEAWYEPFLFNFL 
                                            TIS+VY+VTAVVGVEAWY+P  F++L 
                                            TISMVYLVTAVVGVEAWYKPVFFSIL 
KN909114.1:sub-13870 GTGAGTC  Intron 5   CAGaatagtcgagggggggttacgttaat 
                     <0-----[13870:13738]-0>ctcttattccttgtacgaactttgtt 
                                            gtcggcggtaggagacgtaccccccg 


SPP00000074_2.0  218 YRDLFTAMII                          CALCVTLPMSLLN 
                     YRDLFT MI+                          CA+ +TLPMSL N 
                     YRDLFTTMIV          G:G[ggt]        CAVTITLPMSLYN 
KN909114.1:sub-13659 tcgctaaaagGGTAAGAT  Intron 6   CAGGTtggaaaccaacta 
                     agattccttt <1-----[13628:10415]-1>  gctctctctgtaa 
                     cttccccgcc                          tttcctgggcccc 


SPP00000074_2.0  242 FF                          SYKNNTLKLNSVYEAMVPLFS 
                      F                           Y+N+TLK  ++YE+M+P++S 
                     VF           R:R[aga]       GYRNSTLKHTTLYESMLPIIS 
KN909114.1:sub-10373 gtAGGTAAGTC  Intron 7   CAGAgtcaaatacaattgtaccaat 
                     tt  <2-----[10365: 7959]-2> gagagctaacctaacttcttc 
                     gt                          ttcccagacatacgggggcct 


SPP00000074_2.0  266 PCLLFILSTAWILWSPSDILELHPRVFYFMVGTAFANST           
                     P LLFILST WI  SP+ IL+ HPR+FY+MVGT FAN T           
                     PVLLFILSTFWIFASPAKILDAHPRLFYYMVGTTFANIT           
KN909114.1:subs-7894 cgcctactattatgtcgaacggcccctttaggaatgaaa           
                     cttttttcctgttccccattacacgttaattgcctcatc           
                     cggccagcccgcctttcgcgtccttacccgcgcccctcg           


SPP00000074_2.0  305                        CQLIVCQMSSTRCPTLNWLLVPLFLV 
                                            C+LIVCQMS+TRC  L+WLL+PL LV 
                                            CKLIVCQMSNTRCQPLSWLLIPLTLV 
KN909114.1:subs-7777 GTAACCA  Intron 8   CAGtacagtcaaaaatcccatccactatg 
                     <0-----[7777 : 7381]-0>gatttgatgacggactggtttctctt 
                                            tggtgtggttcacatgcggcccgggg 


SPP00000074_2.0  331 VLVVNLGVASYVESILLYTLTTAFTLAHIHYGVRV               
                     VL V  G A+  E++LL  LT   T+AHIHYGV V               
                     VLAVVSGFANENEALLLVLLTVLVTIAHIHYGVSV               
KN909114.1:subs-7302 gcgggtgtgagaggcccgccagcgaagcactggtg               
                     ttcttcgtcaaaacttttttctttctcataagtct               
                     ctcgcggcctatatcggtggagaatcacaccagag               


SPP00000074_2.0  366                        VKQLSSHFQIYPFSLRKPNSD      
                                            V QLS HF I PFSL+KPN++      
                                            VNQLSKHFNILPFSLKKPNTE      
KN909114.1:subs-7197 GTGAGTG  Intron 9   CAGgaccaactaatcttcaacaag      
                     <0-----[7197 : 6554]-0>taatgaatattctctaacaca      
                                            ctgctaccccagtacagccga      


//
Making a A in phase 1 intron
Making a D in phase 1 intron
Making a G in phase 1 intron
Making a R in phase 2 intron
>KN909114.1:subseq(0,50188).pep
WEYVTAEQLSGFDRYKYSAVDTNPLSLYVMHPFWNFIVKFLPTWLAPNLITFSGFLLLVF
NFLMMAFFDSDFYASAPGHEHVPSWVWIVAGLINFTAYTLDGVDGKQARRTNSSTPLGEL
FDHGLDSWACIYFVVTVYSIFGRGVTGVSVLVLYLLLWVVLFSFILSHWEKYNTGILFLP
WGYDLSQVTISMVYLVTAVVGVEAWYKPVFFSILYRDLFTTMIVGCAVTITLPMSLYNVF
RGYRNSTLKHTTLYESMLPIISPVLLFILSTFWIFASPAKILDAHPRLFYYMVGTTFANI
TCKLIVCQMSNTRCQPLSWLLIPLTLVVLAVVSGFANENEALLLVLLTVLVTIAHIHYGV
SVVNQLSKHFNILPFSLKKPNTE
//
>KN909114.1:subseq(0,50188).[41127:6489].sp
TGGGAATATGTCACCGCCGAGCAGCTCAGCGGCTTCGATCGCTATAAGTACAGCGCGGTG
GACACCAATCCCCTCTCCCTCTATGTTATGCACCCGTTCTGGAACTTCATAGTAAAATTT
TTACCCACATGGCTGGCTCCCAATCTCATCACTTTCAGCGGTTTCTTGCTGTTAGTCTTC
AATTTCCTGATGATGGCGTTCTTTGATTCCGACTTCTACGCGTCTGCACCAGGTCATGAA
CACGTTCCCAGCTGGGTGTGGATAGTAGCCGGACTGATCAACTTCACAGCCTACACACTA
GACGGAGTGGACGGCAAGCAGGCCCGCAGAACCAACTCCAGCACTCCCCTGGGAGAACTG
TTTGACCACGGGCTGGACAGCTGGGCCTGCATCTACTTTGTGGTGACGGTGTACTCCATC
TTCGGGCGCGGGGTGACTGGGGTCAGCGTCCTGGTCCTTTACCTCCTCCTGTGGGTCGTG
CTCTTCTCCTTCATCCTGTCACATTGGGAGAAATACAACACCGGGATCCTCTTCCTGCCC
TGGGGATATGACCTCAGCCAAGTGACGATTTCCATGGTGTACCTGGTGACTGCAGTGGTG
GGAGTGGAAGCCTGGTATAAACCCGTCTTCTTCAGCATCTTGTACCGTGATCTCTTCACC
ACCATGATCGTCGGTTGTGCTGTTACCATCACTCTGCCGATGAGCCTCTACAACGTGTTT
AGAGGTTATCGCAACAGCACATTGAAACACACAACTTTATACGAGTCGATGCTGCCGATC
ATCTCTCCCGTGCTGCTCTTCATACTGTCCACCTTCTGGATCTTCGCTTCTCCTGCCAAG
ATCCTGGATGCCCACCCTCGTCTATTCTACTACATGGTCGGGACCACCTTCGCCAATATC
ACGTGTAAGCTGATTGTGTGTCAGATGAGTAATACCAGATGCCAACCTCTGAGCTGGCTG
CTCATCCCCTTGACGTTGGTGGTCCTTGCCGTGGTCTCGGGGTTCGCCAATGAAAATGAA
GCTCTCCTGCTGGTTCTGCTGACAGTGCTAGTAACTATCGCACACATACACTACGGAGTG
TCAGTGGTCAATCAGCTCAGTAAACACTTCAACATCTTACCGTTTTCACTCAAAAAGCCC
AACACGGAA
//
KN909114.1:subseq(0,50188)	GeneWise	match	41127	6491	601.63	-	.	KN909114.1:subseq(0,50188)-genewise-prediction-1
KN909114.1:subseq(0,50188)	GeneWise	cds	41127	41080	0.00	-	0	KN909114.1:subseq(0,50188)-genewise-prediction-1
KN909114.1:subseq(0,50188)	GeneWise	intron	41079	18965	0.00	-	.	KN909114.1:subseq(0,50188)-genewise-prediction-1
KN909114.1:subseq(0,50188)	GeneWise	cds	18964	18896	0.00	-	0	KN909114.1:subseq(0,50188)-genewise-prediction-1
KN909114.1:subseq(0,50188)	GeneWise	intron	18895	15543	0.00	-	.	KN909114.1:subseq(0,50188)-genewise-prediction-1
KN909114.1:subseq(0,50188)	GeneWise	cds	15542	15434	0.00	-	0	KN909114.1:subseq(0,50188)-genewise-prediction-1
KN909114.1:subseq(0,50188)	GeneWise	intron	15433	14655	0.00	-	.	KN909114.1:subseq(0,50188)-genewise-prediction-1
KN909114.1:subseq(0,50188)	GeneWise	cds	14654	14580	0.00	-	2	KN909114.1:subseq(0,50188)-genewise-prediction-1
KN909114.1:subseq(0,50188)	GeneWise	intron	14579	14134	0.00	-	.	KN909114.1:subseq(0,50188)-genewise-prediction-1
KN909114.1:subseq(0,50188)	GeneWise	cds	14133	13871	0.00	-	2	KN909114.1:subseq(0,50188)-genewise-prediction-1
KN909114.1:subseq(0,50188)	GeneWise	intron	13870	13738	0.00	-	.	KN909114.1:subseq(0,50188)-genewise-prediction-1
KN909114.1:subseq(0,50188)	GeneWise	cds	13737	13629	0.00	-	0	KN909114.1:subseq(0,50188)-genewise-prediction-1
KN909114.1:subseq(0,50188)	GeneWise	intron	13628	10415	0.00	-	.	KN909114.1:subseq(0,50188)-genewise-prediction-1
KN909114.1:subseq(0,50188)	GeneWise	cds	10414	10366	0.00	-	2	KN909114.1:subseq(0,50188)-genewise-prediction-1
KN909114.1:subseq(0,50188)	GeneWise	intron	10365	7959	0.00	-	.	KN909114.1:subseq(0,50188)-genewise-prediction-1
KN909114.1:subseq(0,50188)	GeneWise	cds	7958	7778	0.00	-	1	KN909114.1:subseq(0,50188)-genewise-prediction-1
KN909114.1:subseq(0,50188)	GeneWise	intron	7777	7381	0.00	-	.	KN909114.1:subseq(0,50188)-genewise-prediction-1
KN909114.1:subseq(0,50188)	GeneWise	cds	7380	7198	0.00	-	0	KN909114.1:subseq(0,50188)-genewise-prediction-1
KN909114.1:subseq(0,50188)	GeneWise	intron	7197	6554	0.00	-	.	KN909114.1:subseq(0,50188)-genewise-prediction-1
KN909114.1:subseq(0,50188)	GeneWise	cds	6553	6491	0.00	-	0	KN909114.1:subseq(0,50188)-genewise-prediction-1
//
