
genewise output
Score 253.46 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

ENSXETT00000007    2 MHNLALTVSILMGLLGQVSSSEQTNSSICKPPPKWSIEGEVPMAEALGK 
                     M   +L +  L+GL G V+S++   + +CKP P+W+I GE PM ++ G+ 
                     MSGSSLLLVTLLGLSGLVNSADN-ETRFCKPAPRWAIGGEAPMLQSYGQ 
KN908356.1:subs24006 atgttcccgaccgctgtgatgga gaattacgcctgaggggcaccttgc 
                     tcgccttttcttgtcgttaccaa acgtgacccggctggaccttacaga 
                     ggctttcccctgtcgtggcagtt aggctggtgggccgtggcggacccg 


ENSXETT00000007   51 VTVVALLQASCGFCLVQAA                          MGPL 
                     VTVVALLQASCGFCLVQAA                          MGPL 
                     VTVVALLQASCGFCLVQAA           R:N[aat]       MGPL 
KN908356.1:subs24150 gagggcccgatgttcgcggAAGTAAGTC  Intron 1   CAGTagcc 
                     tcttcttacgggtgttacc  <2-----[24209:24885]-2> tgct 
                     ctgctcaaccccccctgta                          gcgg 


ENSXETT00000007   75 RYKLSLQGMTDIKYMIVNDQSLHSANMFPELKRWAPEGIPVYQQTPGQD 
                     R KL+ QG+T+I Y+IVNDQS  S  +FP+L   AP G+PVYQQ P Q+ 
                     RDKLTNQGLTNISYIIVNDQSSLSRILFPKLVTQAPPGVPVYQQLPEQE 
KN908356.1:subs24899 cgacaacgcaaaataagagcatctaactcacgacgccggcgtccccgcg 
                     gaatcaagtcatgatttaaagctcgtttcattcacccgtctaaatcaaa 
                     tcggctgagcccccctgtcgccccgtgcggggaagcagccgcgggcgga 


ENSXETT00000007  124 DVWELLDGNKDDFLIYD                          CGRLTF 
                     DVWE+LDG+KDDFLIYD                          CGRLTF 
                     DVWEVLDGSKDDFLIYD           R:R[aga]       CGRLTF 
KN908356.1:subs25046 ggtggcggaaggtcatgAGGTAAATG  Intron 2   CAGAtgccat 
                     atgattaggaaatttaa  <2-----[25099:27209]-2> gggtct 
                     tgggtgtacgcctcctc                          taccct 


ENSXETT00000007  148 HVRLPLSFLHFPYVEAAILSTYNESFCGNCSFTSNST             
                     H+RLP S+LHFP+VEAAI +TY E  C NCSF +N T             
                     HIRLPYSYLHFPFVEAAINTTYYEDSCQNCSFYANVT             
KN908356.1:subs27229 caccctatcctctggggaaaattggttcatattgaga             
                     atgtcagatatcttacctaccaaaacgaaggtacatc             
                     tcggtccccccccaggctcctctactcgcccccctcc             


//
Making a N in phase 2 intron
Making a R in phase 2 intron
>KN908356.1:subseq(0,50161).pep
MSGSSLLLVTLLGLSGLVNSADNETRFCKPAPRWAIGGEAPMLQSYGQVTVVALLQASCG
FCLVQAANMGPLRDKLTNQGLTNISYIIVNDQSSLSRILFPKLVTQAPPGVPVYQQLPEQ
EDVWEVLDGSKDDFLIYDRCGRLTFHIRLPYSYLHFPFVEAAINTTYYEDSCQNCSFYAN
VT
//
>KN908356.1:subseq(0,50161).[24006:27339].sp
ATGTCGGGCTCTTCTCTTCTCCTCGTCACCCTTCTGGGTCTCTCGGGTTTGGTGAACTCA
GCGGATAATGAAACGAGGTTCTGTAAGCCGGCTCCGCGGTGGGCCATCGGGGGTGAGGCG
CCCATGCTGCAATCCTACGGCCAGGTCACTGTGGTCGCTCTCCTACAAGCCAGCTGCGGC
TTCTGCCTCGTTCAGGCTGCAAATATGGGCCCGCTGCGTGACAAGCTGACCAATCAGGGA
CTGACCAACATCAGCTACATCATTGTGAATGACCAGAGCTCCCTCTCCAGGATTCTGTTC
CCGAAGCTGGTGACACAAGCGCCCCCAGGGGTCCCCGTGTACCAGCAGCTGCCCGAGCAG
GAAGATGTGTGGGAGGTTCTGGATGGAAGCAAGGACGACTTTCTCATCTATGACAGATGT
GGACGCCTCACCTTTCATATCCGGCTGCCTTACAGCTACCTCCACTTCCCCTTCGTAGAG
GCGGCCATTAACACCACTTACTATGAAGACTCTTGCCAGAACTGCAGCTTCTACGCCAAT
GTCACC
//
KN908356.1:subseq(0,50161)	GeneWise	match	24006	27339	253.46	+	.	KN908356.1:subseq(0,50161)-genewise-prediction-1
KN908356.1:subseq(0,50161)	GeneWise	cds	24006	24208	0.00	+	0	KN908356.1:subseq(0,50161)-genewise-prediction-1
KN908356.1:subseq(0,50161)	GeneWise	intron	24209	24885	0.00	+	.	KN908356.1:subseq(0,50161)-genewise-prediction-1
KN908356.1:subseq(0,50161)	GeneWise	cds	24886	25098	0.00	+	1	KN908356.1:subseq(0,50161)-genewise-prediction-1
KN908356.1:subseq(0,50161)	GeneWise	intron	25099	27209	0.00	+	.	KN908356.1:subseq(0,50161)-genewise-prediction-1
KN908356.1:subseq(0,50161)	GeneWise	cds	27210	27339	0.00	+	1	KN908356.1:subseq(0,50161)-genewise-prediction-1
//

genewise output
Score 17.72 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

ENSXETT00000007  178 SFTSNSTLIPMNG                                     
                     S TS STLIP  G                                     
                     SRTSGSTLIPAGG                                     
KN908356.1:subs-5034 tcaagaacacggg                                     
                     cgcgggcttccgg                                     
                     gcgccttgatccc                                     


//
>KN908356.1:subseq(0,50161).pep
SRTSGSTLIPAGG
//
>KN908356.1:subseq(0,50161).[5034:4994].sp
TCGCGCACGAGCGGCAGTACTCTGATACCTGCCGGCGGC
//
KN908356.1:subseq(0,50161)	GeneWise	match	5034	4996	17.72	-	.	KN908356.1:subseq(0,50161)-genewise-prediction-1
KN908356.1:subseq(0,50161)	GeneWise	cds	5034	4996	0.00	-	0	KN908356.1:subseq(0,50161)-genewise-prediction-1
//
