
genewise output
Score 17.86 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SPP00000070_2.0   73 KPRRGSFEVTLLRPDG                                  
                     K  RG FE T+ R +G                                  
                     KESRGLFEATVARQEG                                  
KN907381.1:subs18001 agaagttggaggacgg                                  
                     aagggttacctcgaag                                  
                     agcacgtgtctaggaa                                  


//
>KN907381.1:subseq(167886,100149).pep
KESRGLFEATVARQEG
//
>KN907381.1:subseq(167886,100149).[18001:18048].sp
AAAGAGAGCAGAGGCTTGTTTGAGGCTACCGTTGCAAGGCAGGAAGGA
//
KN907381.1:subseq(167886,100149)	GeneWise	match	18001	18048	17.86	+	.	KN907381.1:subseq(167886,100149)-genewise-prediction-1
KN907381.1:subseq(167886,100149)	GeneWise	cds	18001	18048	0.00	+	0	KN907381.1:subseq(167886,100149)-genewise-prediction-1
//

genewise output
Score 101.35 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SPP00000070_2.0   45 RVYGRNAAALSQALRLEAPELPVKVNPTKPRRGSFEVTLLRPDGS     
                     RVYGR A  L  A+    PE+  ++NPTKPRRGSFEV L R         
                     RVYGRAANELKSAVLSSFPEMNFEMNPTKPRRGSFEVALHREGAK     
KN907381.1:sub-50140 cgtgcggagcaaggctatcgaatgaacaaccagatgggcccggga     
                     gtaggccaatagcttcgtcatatataccacggggtatctagagca     
                     ctcgatctgggcgtgctcgggctggcccaataaccgccgctaaag     


SPP00000070_2.0   90                           AELWTGIKKGPPRKLKFPEPQEV 
                                                E+WTGIKKGPPRKLKFP+PQE+ 
                               S:S[agt]        VEIWTGIKKGPPRKLKFPDPQEI 
KN907381.1:sub-50005 AGTGAGTG  Intron 1   CAGGTggatagaaagcccacatcgccga 
                      <1-----[50004:49887]-1>  tatgcgtaagccgatatcacaat 
                                               gacgggtgataagaggccccggc 


SPP00000070_2.0  114 VEELKKYL                                          
                     V  ++K L                                          
                     VSSVEKAL                                          
KN907381.1:sub-49815 gttggagt                                          
                     tcctaact                                          
                     cctcggta                                          


//
Making a S in phase 1 intron
>KN907381.1:subseq(167886,100149).pep
RVYGRAANELKSAVLSSFPEMNFEMNPTKPRRGSFEVALHREGAKSVEIWTGIKKGPPRK
LKFPDPQEIVSSVEKAL
//
>KN907381.1:subseq(167886,100149).[50140:49790].sp
CGCGTTTACGGGCGAGCTGCCAATGAGCTGAAGAGCGCGGTTCTGTCCAGTTTCCCGGAG
ATGAACTTTGAGATGAACCCCACCAAACCACGTAGAGGAAGCTTCGAGGTCGCCCTGCAC
CGTGAAGGAGCAAAGAGTGTGGAAATCTGGACGGGGATTAAGAAAGGTCCACCACGGAAA
CTGAAGTTCCCCGACCCCCAGGAGATCGTCTCCTCTGTCGAGAAGGCTTTA
//
KN907381.1:subseq(167886,100149)	GeneWise	match	50140	49792	101.35	-	.	KN907381.1:subseq(167886,100149)-genewise-prediction-1
KN907381.1:subseq(167886,100149)	GeneWise	cds	50140	50005	0.00	-	0	KN907381.1:subseq(167886,100149)-genewise-prediction-1
KN907381.1:subseq(167886,100149)	GeneWise	intron	50004	49887	0.00	-	.	KN907381.1:subseq(167886,100149)-genewise-prediction-1
KN907381.1:subseq(167886,100149)	GeneWise	cds	49886	49792	0.00	-	2	KN907381.1:subseq(167886,100149)-genewise-prediction-1
//
