
genewise output
Score 234.13 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SPP00002890_2.0    1 MWKGFALALALCLLPWGGAESQGHRKRCKEPPEWSIGDQNPMMQSAGKV 
                     MWKGF LALALCLLPWGGA SQGHR  CK+PP+W IG Q+PM+ + G V 
                     MWKGFVLALALCLLPWGGAGSQGHRTLCKKPPDWKIGSQSPMLDADGTV 
KN906419.1:subs48449 atagtgcgcgctccctggggacgccactaaccgtaagtcacacggggag 
                     tgagtttctctgttcgggcggagagctgaaccagatgcagcttacagct 
                     gggctttcgtcctctgagagcgtcaggtaaaatggaacgtcggtataac 


SPP00002890_2.0   50 TVVALLQASXSLCLLQAS                          LEDLR 
                     TVVALLQASX LC LQAS                          L++L+ 
                     TVVALLQASXYLCQLQAS           R:S[agc]       LDELQ 
KN906419.1:subs48596 agggcccgattctcccgtAGGTAAGGC  Intron 1   CAGCtggcc 
                     cttcttacggatgatacc  <2-----[48652:48781]-2> taata 
                     atgattaacacgcgggtc                          gtagg 


SPP00002890_2.0   74 LKLEKEKLVGISYVVVNHQGRQSRAKYDLLKSKVSEHIPVYQQEEYQPD 
                      KL+ E    +S++V++HQ  +S  +   LKS+VSE IPVYQQEE QPD 
                     QKLDNESYTNVSFMVIDHQEERSHHE---LKSRVSERIPVYQQEEEQPD 
KN906419.1:subs48798 catgagataagttagagccggctccg   catagtgcacgtccgggccg 
                     aataaagacatcttttaaaaagcaaa   tacgtcagtctaaaaaaaca 
                     gggttactacgctgccccagacacca   ggcgctgctagtgaggggat 


SPP00002890_2.0  123 VWSLLKGDKDDFFVYD                          CGRLVQH 
                     VW LLKG ++D+++Y+                          CGRLV+H 
                     VWRLLKGKRNDILIYN           R:R[agg]       CGRLVKH 
KN906419.1:subs48936 gtaccagaaagacataAGGTGATTG  Intron 2   CAGGtgccgac 
                     tggttagagaatttaa  <2-----[48986:50001]-2> gggttaa 
                     cgaagggaatctcttc                          tgtgcac 


SPP00002890_2.0  147 LELPYSLLHFPYVEEAIRIAYCEDKCGECEHK                  
                      ELPY+ L F YVE+AI+  YCE+ CG+C+H+                  
                     FELPYAFLQFSYVEDAIKSVYCENTCGDCKHQ                  
KN906419.1:subs50024 tgcctgttctatggggaatgttgaatggtacc                  
                     tatcacttatgataactactagaacggagaaa                  
                     cgtctgtggcttggttagagttacctaccacg                  


//
Making a S in phase 2 intron
Making a R in phase 2 intron
>KN906419.1:subseq(614637,100119).pep
MWKGFVLALALCLLPWGGAGSQGHRTLCKKPPDWKIGSQSPMLDADGTVTVVALLQASXY
LCQLQASSLDELQQKLDNESYTNVSFMVIDHQEERSHHELKSRVSERIPVYQQEEEQPDV
WRLLKGKRNDILIYNRCGRLVKHFELPYAFLQFSYVEDAIKSVYCENTCGDCKHQ
//
>KN906419.1:subseq(614637,100119).[48449:50119].sp
ATGTGGAAGGGCTTTGTTCTTGCCCTGGCTCTCTGCCTTCTCCCTTGGGGAGGGGCAGGG
AGCCAGGGTCACCGAACGCTGTGTAAAAAACCACCAGATTGGAAGATAGGATCCCAGAGT
CCCATGCTGGATGCAGATGGAACAGTCACAGTTGTGGCACTTCTTCAAGCAAGCTGATAC
CTGTGCCAGCTGCAGGCTTCCAGCTTGGATGAACTGCAGCAGAAGTTGGATAATGAAAGC
TATACAAACGTGTCCTTTATGGTCATCGACCACCAAGAGGAACGCTCACACCACGAACTG
AAGTCCAGGGTCTCTGAGCGCATTCCAGTGTATCAGCAAGAGGAGGAGCAGCCAGATGTC
TGGAGACTACTGAAGGGGAAAAGAAATGACATTCTCATTTATAACAGGTGTGGGCGTCTG
GTCAAACACTTCGAGCTTCCCTATGCGTTTTTGCAGTTCAGTTATGTGGAGGATGCTATA
AAGTCAGTGTATTGTGAAAACACCTGTGGAGACTGCAAACACCAG
//
KN906419.1:subseq(614637,100119)	GeneWise	match	48449	50119	236.13	+	.	KN906419.1:subseq(614637,100119)-genewise-prediction-1
KN906419.1:subseq(614637,100119)	GeneWise	cds	48449	48651	0.00	+	0	KN906419.1:subseq(614637,100119)-genewise-prediction-1
KN906419.1:subseq(614637,100119)	GeneWise	intron	48652	48781	0.00	+	.	KN906419.1:subseq(614637,100119)-genewise-prediction-1
KN906419.1:subseq(614637,100119)	GeneWise	cds	48782	48985	0.00	+	1	KN906419.1:subseq(614637,100119)-genewise-prediction-1
KN906419.1:subseq(614637,100119)	GeneWise	intron	48986	50001	0.00	+	.	KN906419.1:subseq(614637,100119)-genewise-prediction-1
KN906419.1:subseq(614637,100119)	GeneWise	cds	50002	50119	0.00	+	1	KN906419.1:subseq(614637,100119)-genewise-prediction-1
//

genewise output
Score 19.28 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SPP00002890_2.0   62 CLLQASRLED                                        
                     CL Q SRLED                                        
                     CLTQVSRLED                                        
KN906419.1:sub-57945 tcacgtatgg                                        
                     gtcatcgtaa                                        
                     tgaagtaagc                                        


//
>KN906419.1:subseq(614637,100119).pep
CLTQVSRLED
//
>KN906419.1:subseq(614637,100119).[57945:57914].sp
TGTCTGACACAAGTGTCTAGATTAGAGGAC
//
KN906419.1:subseq(614637,100119)	GeneWise	match	57945	57916	19.28	-	.	KN906419.1:subseq(614637,100119)-genewise-prediction-1
KN906419.1:subseq(614637,100119)	GeneWise	cds	57945	57916	0.00	-	0	KN906419.1:subseq(614637,100119)-genewise-prediction-1
//
