
genewise output
Score 180.82 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SPP00000027_2.0   28 MCASRDDWRCARSMHEFSAKDIDGHMVNLDKY                  
                     +CA   DW+ A++++EFSA DI G++V+L+KY                  
                     QCAEVSDWKNAKTIYEFSATDIAGNFVSLEKY                  
KN906249.1:subs49997 ctgggagtaagaaatgttgagaggatgtcgat                  
                     agcatgagaacactaatcccatcgattctaaa                  
                     gtcggtcggtggcttactttcttctctcggac                  


SPP00000027_2.0   60                           GFVCIVTNVASQXGKTEVNYTQL 
                                               GFVCI+ NVAS+XGKT VNYTQL 
                                R:R[agg]       GFVCIIVNVASKXGKTPVNYTQL 
KN906249.1:subs50093 AGGTAACGT  Intron 1   CAGGgtgtaagaggtatgaacgatacc 
                       <2-----[50095:51537]-2> gttgtttatccaggacctaacat 
                                               ctccctctaataaaaaaacctgt 


SPP00000027_2.0   84 VDLHARYAECGLRILAFPCNQFGKQ                       E 
                      ++HARYAE GL IL FPCNQFGKQ                       E 
                     AEMHARYAEKGLHILGFPCNQFGKQ                       E 
KN906249.1:subs51608 ggacgatggagtcacgtctactgacGTATGTT  Intron 2   AAGg 
                     catacgacaagtattgtcgaatgaa<0-----[51683:55018]-0>a 
                     aagccattgatacccgtcctgtagg                       a 


SPP00000027_2.0  110 PGSNEEIKEFAAGYNVKFDMFSKICVNGDDAHPLWKWMKIQPKGKGILG 
                     PG   +IK+FAA YNVKFDMFSKI VNGD AHPLWKWMK QPKG+G LG 
                     PGDEAQIKDFAASYNVKFDMFSKIEVNGDGAHPLWKWMKEQPKGRGTLG 
KN906249.1:subs55022 cggggcaagtggttagatgataaaggaggggccttataagccagcgacg 
                     cgaacataatcccaatatattgatatagagcactgagtaaacagggctg 
                     tgtatatattgacctagtcgccgtgccattctcggagggggtaagttga 


//
Making a R in phase 2 intron
>KN906249.1:subseq(759658,100095).pep
QCAEVSDWKNAKTIYEFSATDIAGNFVSLEKYRGFVCIIVNVASKXGKTPVNYTQLAEMH
ARYAEKGLHILGFPCNQFGKQEPGDEAQIKDFAASYNVKFDMFSKIEVNGDGAHPLWKWM
KEQPKGRGTLG
//
>KN906249.1:subseq(759658,100095).[49997:55168].sp
CAGTGTGCCGAGGTGAGTGACTGGAAGAATGCGAAGACCATTTATGAATTCTCTGCTACT
GACATTGCTGGCAATTTCGTTTCCCTGGAGAAATACAGGGGCTTTGTCTGCATCATTGTC
AATGTAGCATCTAAATGAGGAAAAACACCAGTAAACTACACTCAGCTTGCAGAAATGCAC
GCCAGATATGCTGAGAAAGGTTTACACATCCTCGGGTTTCCCTGCAATCAGTTTGGAAAG
CAGGAACCTGGGGATGAAGCTCAAATTAAAGATTTTGCGGCATCCTACAATGTAAAGTTT
GACATGTTCAGCAAGATTGAGGTCAACGGAGATGGTGCCCATCCCTTGTGGAAATGGATG
AAGGAGCAGCCTAAAGGACGGGGTACTCTGGGA
//
KN906249.1:subseq(759658,100095)	GeneWise	match	49997	55168	180.82	+	.	KN906249.1:subseq(759658,100095)-genewise-prediction-1
KN906249.1:subseq(759658,100095)	GeneWise	cds	49997	50094	0.00	+	0	KN906249.1:subseq(759658,100095)-genewise-prediction-1
KN906249.1:subseq(759658,100095)	GeneWise	intron	50095	51537	0.00	+	.	KN906249.1:subseq(759658,100095)-genewise-prediction-1
KN906249.1:subseq(759658,100095)	GeneWise	cds	51538	51682	0.00	+	1	KN906249.1:subseq(759658,100095)-genewise-prediction-1
KN906249.1:subseq(759658,100095)	GeneWise	intron	51683	55018	0.00	+	.	KN906249.1:subseq(759658,100095)-genewise-prediction-1
KN906249.1:subseq(759658,100095)	GeneWise	cds	55019	55168	0.00	+	0	KN906249.1:subseq(759658,100095)-genewise-prediction-1
//

genewise output
Score 19.00 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SPP00000027_2.0    4 GRLCRLLKPAL                                       
                     G++CR L PA+                                       
                     GKICRFLSPAM                                       
KN906249.1:sub-44693 gaatatctcga                                       
                     gatggttccct                                       
                     agccgctaagg                                       


//
>KN906249.1:subseq(759658,100095).pep
GKICRFLSPAM
//
>KN906249.1:subseq(759658,100095).[44693:44659].sp
GGAAAGATCTGCAGGTTCCTTTCACCAGCGATG
//
KN906249.1:subseq(759658,100095)	GeneWise	match	44693	44661	19.00	-	.	KN906249.1:subseq(759658,100095)-genewise-prediction-1
KN906249.1:subseq(759658,100095)	GeneWise	cds	44693	44661	0.00	-	0	KN906249.1:subseq(759658,100095)-genewise-prediction-1
//
