
genewise output
Score 564.07 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SPP00002903_2.0   15 GIRHDYDLLVIGGGSGGLACAKQ                           
                     G+ +DYDLLVIGGGSGGLACAK+                           
                     GLHYDYDLLVIGGGSGGLACAKE          A:A[gct]         
KN906108.1:subs32615 gtctgtgtcgagggtggcgtgagGGTAAGAC  Intron 1   CAGCT 
                     gtaaaaattttgggcggtcgcaa <1-----[32685:37004]-1>   
                     tatttttgggtcactatgctcaa                           


SPP00002903_2.0   39 AQFGKKVAVFDYVEPSPR                          TKWGI 
                     AQ G +VAVFDYVEPSP+                          TKWGI 
                     AQHGSRVAVFDYVEPSPK          G:G[ggc]        TKWGI 
KN906108.1:subs37007 gccgaagggtgtggctcaGGTATGAT  Intron 2   TAGGCaatga 
                     caagggtcttaataccca <1-----[37062:40834]-1>  caggt 
                     catacatagtctggatca                          cagac 


SPP00002903_2.0   63 GGTCVNVGCIPKKLMHQAALIGSTLKDAPHYGWDTPNEIQHN        
                     GGTCVNVGCIPKKLMHQA L+G  LKDAPHYGW   +  QHN        
                     GGTCVNVGCIPKKLMHQAGLLGGALKDAPHYGWHVHHPTQHN        
KN906108.1:subs40852 ggatgaggtacaacaccggccgggcaggcctgtcgcccacca        
                     ggcgtatggtcaattaacgttggctaaccaaggataaccaaa        
                     agctattcctaaaggcgttggatcgatccttcgtattaggcc        


SPP00002903_2.0  105                           GKMAKAVQNYVKSLNWGHRIQLQ 
                                                 MA+AVQNYVKSLNWGHR+QLQ 
                                W:W[tgg]       STMAQAVQNYVKSLNWGHRVQLQ 
KN906108.1:subs40978 TGGTAATGT  Intron 3   TAGGtaagcggcatgattatgccgccc 
                       <2-----[40980:44818]-2> cctcactaaatactaggagtata 
                                               aagaattgttgaaacgacaaaga 


SPP00002903_2.0  129 D                          KVKYFNMKASFVDEHCIRGVTK 
                     D                          KVKYFN+KASFV+EH + G+T  
                     D           K:K[aaa]       KVKYFNLKASFVNEHTVHGLTS 
KN906108.1:subs44889 gAAGTAAGTC  Intron 4   CAGAagattacagatgagcagcgtaa 
                     a  <2-----[44894:47764]-2> ataatatacgttaaactagtcg 
                     c                          gtgttcggcttttgtagtaatc 


SPP00002903_2.0  153 AGKE                       TLVTAENIVIATGGRPKYPTH  
                      GKE                       T+VTA NIV+ATGGRPKYPT+  
                     TGKE                       TIVTANNIVLATGGRPKYPTN  
KN906108.1:subs47832 agagGTATGTT  Intron 5   CAGaagagaaagcgaggacatcaa  
                     cgaa<0-----[47844:50002]-0>cttccaatttccgggcaacca  
                     taag                       aagtaccagataaagaattat  


SPP00002903_2.0  178                        VPGALEYGITSDDLFWLKESPGK    
                                            VPGA+E+ ITSDDLFWLKE PGK    
                                            VPGAVEHCITSDDLFWLKEPPGK    
KN906108.1:subs50066 GTAAGAA  Intron 6   CAGgcggggctaaaggcttcagccga    
                     <0-----[50066:53332]-0>tcgctaagtcgaattgtaaccga    
                                            ttaaaatttacttctggaatgga    


SPP00002903_2.0  201                           LVVGAS                  
                                               LVVGAS                  
                                T:T[aca]       LVVGAS                  
KN906108.1:subs53402 ACGTATGTG  Intron 7   CAGAtgggga                  
                       <2-----[53404:66355]-2> tttgcg                  
                                               gctacc                  


SPP00002903_2.0  208                           VSLECAGFLTGIGLDTAAMVRSI 
                                               VSLECAGFLTGIG DT  M+RSI 
                               Y:Y[tat]        VSLECAGFLTGIGQDTTTMIRSI 
KN906108.1:subs66375 TGTATCCT  Intron 8   AAGATgtcgtggttagagcgaaaaaaaa 
                      <1-----[66376:68921]-1>  tctagcgttcgtgaacccttggt 
                                               catgtaacgtatcgtcccgtgta 


SPP00002903_2.0  232 PLRGFDQ                       QMAYLVTDYMELHGTKFLW 
                     PLRGFDQ                       QMA LVTDYME +GTKFL  
                     PLRGFDQ                       QMAVLVTDYMESYGTKFLR 
KN906108.1:subs68993 ccagtgcGTAAGCA  Intron 9   CAGcaggcgagtagttgaatta 
                     ctggtaa<0-----[69014:69140]-0>atctttcaatacagcattg 
                     tcggttg                       agtgagttcggcttagcaa 


SPP00002903_2.0  258 KCTPSNVEKLKNGKLEVTWKNTESGKEGADIYDTVMWAV           
                     KC+P++VEKL++GKL+VTWKN +S + G + +DTVMWAV           
                     KCSPTSVEKLESGKLQVTWKNMDSAEGGKETFDTVMWAV           
KN906108.1:subs69198 atacaaggatgagaccgataaagtggggagatgagatgg           
                     aggccgtaataggatatcgaataccaggaactacttgct           
                     atcgataagggtaagggcgacgtttaaaggttctcggta           


SPP00002903_2.0  297                           RAAETQYLNLEKVGVDVKSDTGK 
                                               RA ET++L+LEKVGV++K +TGK 
                               G:G[ggt]        RAPETKHLHLEKVGVNIKPETGK 
KN906108.1:subs69315 GGTAAGAT  Intron 10  TAGGTcgcgaaccctgagggaaacgaga 
                      <1-----[69316:91447]-1>  gccacaatataatgtatacacga 
                                               tttatgtgtgggtagtcgtaaag 


SPP00002903_2.0  321 IIVNASEATSVPHIYAIGDITE                       GRPE 
                     IIV+A EATSVP+I+AIGDI+E                       GRPE 
                     IIVDALEATSVPNIFAIGDISE                       GRPE 
KN906108.1:subs91519 aagggtggatgcaatgaggatgGTAAACC  Intron 11  TAGgccg 
                     tttactaccctcattctgatca<0-----[91585:92787]-0>ggca 
                     attttgacgttacatacactgg                       tcag 


SPP00002903_2.0  347 LTPTAIAAGKLLASRLFSGSAELMDYDS                      
                     LTPTAIAAGKLLA RLF  S ELMDYDS                      
                     LTPTAIAAGKLLARRLFGNSTELMDYDS                      
KN906108.1:subs92800 cacagagggactgccttgatagtagtgaGTAAGTG  Intron 12    
                     tcccctccgattcggttgaccattaaag<0-----[92884:93112]  
                     gataccataatgagaattctaaggttcc                      


SPP00002903_2.0  375    VPTTVFTPLEYGCVGISEEDAKERYGDDNIE                
                        VPTTVFTPLEYGCVG+SEE+A   YG+D IE                
                        VPTTVFTPLEYGCVGLSEEEALASYGEDAIE                
KN906108.1:subs93110 CAGgcaagtaccgtgtggctggggtgttggggag                
                     -0>tcccttcctaaggtgtcaaactccagaacta                
                        tctagctaaatttagctgggcaaatagtttg                


SPP00002903_2.0  406                        VFHAFYKPLEFIVAERNGSQCYIKI  
                                            VFHAFYKPLEF VA R+ SQCYIK+  
                                            VFHAFYKPLEFTVAGRDASQCYIKV  
KN906108.1:subs93206 GTATAAT  Intron 13  CAGgtcgttaccgtagggaggtcttaag  
                     <0-----[93206:97710]-0>ttactaactatctcggaccagatat  
                                            cctaccatgacagtcatttgtttgg  


//
Making a A in phase 1 intron
Making a G in phase 1 intron
Making a W in phase 2 intron
Making a K in phase 2 intron
Making a T in phase 2 intron
Making a Y in phase 1 intron
Making a G in phase 1 intron
>KN906108.1:subseq(490578,100068).pep
GLHYDYDLLVIGGGSGGLACAKEAAQHGSRVAVFDYVEPSPKGTKWGIGGTCVNVGCIPK
KLMHQAGLLGGALKDAPHYGWHVHHPTQHNWSTMAQAVQNYVKSLNWGHRVQLQDKKVKY
FNLKASFVNEHTVHGLTSTGKETIVTANNIVLATGGRPKYPTNVPGAVEHCITSDDLFWL
KEPPGKTLVVGASYVSLECAGFLTGIGQDTTTMIRSIPLRGFDQQMAVLVTDYMESYGTK
FLRKCSPTSVEKLESGKLQVTWKNMDSAEGGKETFDTVMWAVGRAPETKHLHLEKVGVNI
KPETGKIIVDALEATSVPNIFAIGDISEGRPELTPTAIAAGKLLARRLFGNSTELMDYDS
VPTTVFTPLEYGCVGLSEEEALASYGEDAIEVFHAFYKPLEFTVAGRDASQCYIKV
//
>KN906108.1:subseq(490578,100068).[32615:97785].sp
GGTTTACATTATGATTATGATTTGCTGGTGATTGGCGGAGGCTCTGGAGGTCTGGCCTGT
GCCAAAGAAGCTGCCCAACATGGAAGCAGAGTTGCAGTGTTTGACTATGTGGAGCCATCT
CCCAAAGGCACCAAATGGGGAATCGGAGGGACCTGTGTAAATGTTGGCTGCATTCCAAAA
AAACTGATGCACCAGGCTGGTCTGCTGGGAGGTGCCCTGAAAGATGCCCCCCATTATGGC
TGGCATGTACATCATCCAACGCAGCACAACTGGTCAACAATGGCACAAGCTGTTCAGAAT
TATGTGAAATCATTAAACTGGGGACACCGAGTACAACTGCAAGACAAAAAGGTTAAGTAT
TTTAACCTGAAGGCCAGTTTTGTTAATGAGCATACAGTGCATGGATTAACTAGCACTGGA
AAAGAGACAATAGTGACTGCAAACAACATAGTGCTAGCTACAGGAGGAAGGCCAAAATAT
CCTACAAATGTTCCTGGAGCAGTAGAACATTGTATTACAAGCGATGATCTCTTTTGGCTG
AAAGAACCTCCGGGGAAAACATTGGTCGTTGGAGCCAGCTATGTCTCACTTGAGTGTGCA
GGATTCTTGACTGGAATTGGCCAGGATACCACCACCATGATTAGGAGTATACCTCTCAGG
GGGTTTGATCAGCAAATGGCTGTGCTAGTGACTGATTACATGGAGTCCTATGGTACAAAG
TTCTTAAGAAAATGTAGCCCGACAAGTGTAGAAAAGTTGGAGAGTGGAAAACTGCAGGTG
ACCTGGAAAAACATGGATTCTGCTGAAGGAGGAAAGGAGACTTTTGACACTGTCATGTGG
GCTGTAGGTCGTGCTCCTGAAACTAAGCATCTGCATTTGGAGAAGGTTGGAGTGAATATC
AAGCCTGAAACAGGAAAGATAATTGTTGATGCTTTGGAAGCCACGTCTGTTCCAAACATA
TTTGCAATCGGAGACATTTCGGAGGGTCGCCCAGAGCTGACACCTACAGCCATCGCAGCT
GGAAAACTTTTGGCACGGCGATTATTTGGTAACTCTACAGAATTGATGGATTATGACAGC
GTTCCCACTACAGTGTTCACTCCACTAGAATATGGTTGTGTAGGGCTCTCTGAGGAGGAG
GCCTTAGCATCATATGGAGAGGATGCTATTGAGGTCTTCCATGCATTCTACAAACCTCTG
GAATTCACAGTGGCTGGCAGAGATGCTTCTCAGTGTTATATTAAGGTG
//
KN906108.1:subseq(490578,100068)	GeneWise	match	32615	97785	564.07	+	.	KN906108.1:subseq(490578,100068)-genewise-prediction-1
KN906108.1:subseq(490578,100068)	GeneWise	cds	32615	32684	0.00	+	0	KN906108.1:subseq(490578,100068)-genewise-prediction-1
KN906108.1:subseq(490578,100068)	GeneWise	intron	32685	37004	0.00	+	.	KN906108.1:subseq(490578,100068)-genewise-prediction-1
KN906108.1:subseq(490578,100068)	GeneWise	cds	37005	37061	0.00	+	2	KN906108.1:subseq(490578,100068)-genewise-prediction-1
KN906108.1:subseq(490578,100068)	GeneWise	intron	37062	40834	0.00	+	.	KN906108.1:subseq(490578,100068)-genewise-prediction-1
KN906108.1:subseq(490578,100068)	GeneWise	cds	40835	40979	0.00	+	2	KN906108.1:subseq(490578,100068)-genewise-prediction-1
KN906108.1:subseq(490578,100068)	GeneWise	intron	40980	44818	0.00	+	.	KN906108.1:subseq(490578,100068)-genewise-prediction-1
KN906108.1:subseq(490578,100068)	GeneWise	cds	44819	44893	0.00	+	1	KN906108.1:subseq(490578,100068)-genewise-prediction-1
KN906108.1:subseq(490578,100068)	GeneWise	intron	44894	47764	0.00	+	.	KN906108.1:subseq(490578,100068)-genewise-prediction-1
KN906108.1:subseq(490578,100068)	GeneWise	cds	47765	47843	0.00	+	1	KN906108.1:subseq(490578,100068)-genewise-prediction-1
KN906108.1:subseq(490578,100068)	GeneWise	intron	47844	50002	0.00	+	.	KN906108.1:subseq(490578,100068)-genewise-prediction-1
KN906108.1:subseq(490578,100068)	GeneWise	cds	50003	50065	0.00	+	0	KN906108.1:subseq(490578,100068)-genewise-prediction-1
KN906108.1:subseq(490578,100068)	GeneWise	intron	50066	53332	0.00	+	.	KN906108.1:subseq(490578,100068)-genewise-prediction-1
KN906108.1:subseq(490578,100068)	GeneWise	cds	53333	53403	0.00	+	0	KN906108.1:subseq(490578,100068)-genewise-prediction-1
KN906108.1:subseq(490578,100068)	GeneWise	intron	53404	66355	0.00	+	.	KN906108.1:subseq(490578,100068)-genewise-prediction-1
KN906108.1:subseq(490578,100068)	GeneWise	cds	66356	66375	0.00	+	1	KN906108.1:subseq(490578,100068)-genewise-prediction-1
KN906108.1:subseq(490578,100068)	GeneWise	intron	66376	68921	0.00	+	.	KN906108.1:subseq(490578,100068)-genewise-prediction-1
KN906108.1:subseq(490578,100068)	GeneWise	cds	68922	69013	0.00	+	2	KN906108.1:subseq(490578,100068)-genewise-prediction-1
KN906108.1:subseq(490578,100068)	GeneWise	intron	69014	69140	0.00	+	.	KN906108.1:subseq(490578,100068)-genewise-prediction-1
KN906108.1:subseq(490578,100068)	GeneWise	cds	69141	69315	0.00	+	0	KN906108.1:subseq(490578,100068)-genewise-prediction-1
KN906108.1:subseq(490578,100068)	GeneWise	intron	69316	91447	0.00	+	.	KN906108.1:subseq(490578,100068)-genewise-prediction-1
KN906108.1:subseq(490578,100068)	GeneWise	cds	91448	91584	0.00	+	2	KN906108.1:subseq(490578,100068)-genewise-prediction-1
KN906108.1:subseq(490578,100068)	GeneWise	intron	91585	92787	0.00	+	.	KN906108.1:subseq(490578,100068)-genewise-prediction-1
KN906108.1:subseq(490578,100068)	GeneWise	cds	92788	92883	0.00	+	0	KN906108.1:subseq(490578,100068)-genewise-prediction-1
KN906108.1:subseq(490578,100068)	GeneWise	intron	92884	93112	0.00	+	.	KN906108.1:subseq(490578,100068)-genewise-prediction-1
KN906108.1:subseq(490578,100068)	GeneWise	cds	93113	93205	0.00	+	0	KN906108.1:subseq(490578,100068)-genewise-prediction-1
KN906108.1:subseq(490578,100068)	GeneWise	intron	93206	97710	0.00	+	.	KN906108.1:subseq(490578,100068)-genewise-prediction-1
KN906108.1:subseq(490578,100068)	GeneWise	cds	97711	97785	0.00	+	0	KN906108.1:subseq(490578,100068)-genewise-prediction-1
//

genewise output
Score 17.60 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SPP00002903_2.0  243 LVTDYMELHGTKFLWKCTPSNVE                           
                     +V  Y+ L G +   KCT +N E                           
                     VVGTYLALEGERRPCKCTQNNCE                           
KN906108.1:sub-77340 gggatcgcgggaactatacaatg                           
                     ttgcatctagaggcgagcaaaga                           
                     ggacccaaatagaacgccgccta                           


//
>KN906108.1:subseq(490578,100068).pep
VVGTYLALEGERRPCKCTQNNCE
//
>KN906108.1:subseq(490578,100068).[77340:77270].sp
GTGGTGGGAACCTACCTCGCACTAGAAGGTGAAAGGAGACCATGCAAGTGCACCCAGAAC
AACTGTGAA
//
KN906108.1:subseq(490578,100068)	GeneWise	match	77340	77272	17.60	-	.	KN906108.1:subseq(490578,100068)-genewise-prediction-1
KN906108.1:subseq(490578,100068)	GeneWise	cds	77340	77272	0.00	-	0	KN906108.1:subseq(490578,100068)-genewise-prediction-1
//
