
genewise output
Score 194.54 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SPP00002881_2.0   12 LSSYGAELSSEACRDLGFSSNLLCTSCELLGQFGLNEINLFCRQCCQEE 
                     +S+YG ELSSEACRDLGFSSNLLC SC LLG+F L  I   CRQCCQEE 
                     ISTYGVELSSEACRDLGFSSNLLCNSCGLLGEFDLKGIEPACRQCCQEE 
KN906065.1:subs38999 atatgggcttggtagcgttaatttattgccggtgcagagcgtacttcgg 
                     tccagtatccacggatgtcgattgacggttgatatagtaccggaggaaa 
                     aagtcgaggaaacactgtatcagccctcttggtcgggcaaacggtcgag 


SPP00002881_2.0   61 VHLESKK                       RYPGAVLEVCGXKLGRFPQ 
                       LES+K                        Y GA+LEVCGXKLGRFPQ 
                     AQLESRK                       MYAGAILEVCGXKLGRFPQ 
KN906065.1:subs39146 gctgtaaGTACCGT  Intron 1   CAGatgggacggtgtatgatcc 
                     catacga<0-----[39167:49996]-0>tacgcttatgggatggtca 
                     aaaaaag                       gtaattagccaaagggcta 


SPP00002881_2.0   87 VQ                          FVRSEKPKLFKGLQIK      
                     VQ                          FVRS+KPKLFKGLQIK      
                     VQ          A:A[gct]        FVRSDKPKLFKGLQIK      
KN906065.1:subs50054 gcGGTAAGCG  Intron 2   CAGCTtgaagacactagccaa      
                     ta <1-----[50061:52081]-1>  ttggaacattagtata      
                     cg                          tcgttgcgacgtgacg      


SPP00002881_2.0  106                        YVRGSDPVLKLLDENGNISEELSILK 
                                            YVRG+DPVLKLLD++GNISEELSI K 
                                            YVRGADPVLKLLDDHGNISEELSITK 
KN906065.1:subs52132 GTAGGTC  Intron 3   CAGtgcgggcgcaccggcgaatggcaaaa 
                     <0-----[52132:53007]-0>atggcacttattaaagatcaatgtca 
                                            tgtctttaggggtctgcctaacccca 


SPP00002881_2.0  132 WNTDSVEEFLSEKLDRL                                 
                     WNTDSVEEFLSEKL RL                                 
                     WNTDSVEEFLSEKLHRL                                 
KN906065.1:subs53086 taagagggtcagatcct                                 
                     gacagtaattgaatagt                                 
                     gcactaaacctaagcta                                 


//
Making a A in phase 1 intron
>KN906065.1:subseq(893204,100062).pep
ISTYGVELSSEACRDLGFSSNLLCNSCGLLGEFDLKGIEPACRQCCQEEAQLESRKMYAG
AILEVCGXKLGRFPQVQAFVRSDKPKLFKGLQIKYVRGADPVLKLLDDHGNISEELSITK
WNTDSVEEFLSEKLHRL
//
>KN906065.1:subseq(893204,100062).[38999:53136].sp
ATATCAACGTATGGCGTGGAACTGTCGTCAGAAGCATGCAGAGACCTTGGGTTTTCAAGT
AACTTATTGTGCAACTCCTGTGGCCTTCTTGGGGAGTTTGACCTGAAGGGGATCGAACCA
GCATGCAGGCAGTGTTGCCAGGAAGAGGCACAATTAGAATCAAGAAAGATGTATGCAGGA
GCTATTCTAGAGGTCTGCGGATGAAAATTGGGGAGGTTCCCTCAAGTCCAGGCTTTTGTC
AGGAGTGATAAGCCCAAGCTATTCAAGGGTCTGCAAATCAAGTATGTGCGTGGCGCTGAT
CCTGTACTGAAGCTGCTGGATGACCATGGGAACATCTCTGAAGAACTCAGCATCACCAAA
TGGAACACAGACAGTGTAGAAGAATTCCTCAGTGAAAAATTGCACCGTTTA
//
KN906065.1:subseq(893204,100062)	GeneWise	match	38999	53136	194.54	+	.	KN906065.1:subseq(893204,100062)-genewise-prediction-1
KN906065.1:subseq(893204,100062)	GeneWise	cds	38999	39166	0.00	+	0	KN906065.1:subseq(893204,100062)-genewise-prediction-1
KN906065.1:subseq(893204,100062)	GeneWise	intron	39167	49996	0.00	+	.	KN906065.1:subseq(893204,100062)-genewise-prediction-1
KN906065.1:subseq(893204,100062)	GeneWise	cds	49997	50060	0.00	+	0	KN906065.1:subseq(893204,100062)-genewise-prediction-1
KN906065.1:subseq(893204,100062)	GeneWise	intron	50061	52081	0.00	+	.	KN906065.1:subseq(893204,100062)-genewise-prediction-1
KN906065.1:subseq(893204,100062)	GeneWise	cds	52082	52131	0.00	+	2	KN906065.1:subseq(893204,100062)-genewise-prediction-1
KN906065.1:subseq(893204,100062)	GeneWise	intron	52132	53007	0.00	+	.	KN906065.1:subseq(893204,100062)-genewise-prediction-1
KN906065.1:subseq(893204,100062)	GeneWise	cds	53008	53136	0.00	+	0	KN906065.1:subseq(893204,100062)-genewise-prediction-1
//

genewise output
Score 18.51 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SPP00002881_2.0   51 LFCRQCCQEEVHLESKKRYP                              
                     LFC  CC +E   +S    P                              
                     LFCTFCCCQEPSFDSSANTP                              
KN906065.1:sub-80498 tttattttcgcttgtagaac                              
                     ttgctgggaacctacgcacc                              
                     gcttttccaactcttcatca                              


//
>KN906065.1:subseq(893204,100062).pep
LFCTFCCCQEPSFDSSANTP
//
>KN906065.1:subseq(893204,100062).[80498:80437].sp
TTGTTCTGTACTTTTTGTTGCTGCCAAGAACCCTCTTTCGATTCTAGCGCAAATACCCCA
//
KN906065.1:subseq(893204,100062)	GeneWise	match	80498	80439	18.51	-	.	KN906065.1:subseq(893204,100062)-genewise-prediction-1
KN906065.1:subseq(893204,100062)	GeneWise	cds	80498	80439	0.00	-	0	KN906065.1:subseq(893204,100062)-genewise-prediction-1
//
