
genewise output
Score 21.75 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SPP00000021_2.0   54 IPFKQYAGKYVLFVNV                                  
                     I F+ Y+GK++LF NV                                  
                     IYFRPYSGKHLLFHNV                                  
KN906051.1:subs15680 attacttgactctcag                                  
                     tatgcacgaatttaat                                  
                     actgttacgtaatctg                                  


//
>KN906051.1:subseq(1063028,100125).pep
IYFRPYSGKHLLFHNV
//
>KN906051.1:subseq(1063028,100125).[15680:15727].sp
ATATACTTTAGGCCTTATTCAGGCAAGCATTTACTATTTCACAATGTG
//
KN906051.1:subseq(1063028,100125)	GeneWise	match	15680	15727	21.75	+	.	KN906051.1:subseq(1063028,100125)-genewise-prediction-1
KN906051.1:subseq(1063028,100125)	GeneWise	cds	15680	15727	0.00	+	0	KN906051.1:subseq(1063028,100125)-genewise-prediction-1
//

genewise output
Score 274.05 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SPP00000021_2.0   28 SKMDCHGGISGTIYEYGALTIDGEEYIPFKQYAGKYVLFVNVASYXGLT 
                     S++DC+  ++GTIY+YGALTID  +++ FKQY GK VLFVNVA+YXGLT 
                     SQVDCYSSVAGTIYDYGALTIDESQFVHFKQYQGKTVLFVNVATYXGLT 
KN906051.1:sub-54186 tcggttatgggaatgtggcaaggactgctactcgaagctgaggattgta 
                     catagagctcgctaaagctctaagattataaaagacttttatccaggtc 
                     tgtcccctgtacctcttcctacacgccccgatgggtggtgtgctcagac 


SPP00000021_2.0   77 GQYI                          LNALQEELAPFGLVILGFP 
                      QY+                          LNALQEEL   G VILGFP 
                     MQYL          E:E[gaa]        LNALQEELGNNGFVILGFP 
KN906051.1:sub-54039 actcGGTAAGCT  Intron 1   CAGAAcagccggcgaagtgatgtc 
                     taat <1-----[54026:50125]-1>  tactaaatgaagttttgtc 
                     ggca                          gtaaaaagattgtccgttc 


SPP00000021_2.0  101 CNQFGKQEPGENSEILPTL                          YVRP 
                     CNQFG QEPG N EIL  L                           VRP 
                     CNQFGLQEPGSNEEILKGL           K:K[aaa]       CVRP 
KN906051.1:sub-50065 tactgccgcgaaggacagtAAGTAAGTG  Intron 2   CAGAtgcc 
                     gaatgtaacggaaattagt  <2-----[50006:46258]-2> gtgc 
                     ctattagaaactaactaaa                          tgtt 


SPP00000021_2.0  125 GGGFVPNFQLFEKGDVNGEKEQKFYTFLK                     
                     GGGF PNFQ+FEKGD+NG+KEQK+YTFLK                     
                     GGGFTPNFQIFEKGDINGKKEQKIYTFLK                     
KN906051.1:sub-46244 gggtacatcatgaggaagaagcaatattaGTACTTT  Intron 3    
                     gggtccatattaagatagaaaaatactta<0-----[46157:44549] 
                     ttcctatcgatgaactcggaagaacccgg                     


SPP00000021_2.0  154    NSCPPTSELLGT-SDRLFWEPMKVHDIRWNFEKFLVGPDGIPIMRW 
                        NSCPP  +L G   +RLFWEP+KV+D++WNFEKFLVGPDG P+ RW 
                        NSCPPVGDLFGNPQNRLFWEPLKVNDVKWNFEKFLVGPDGRPVKRW 
KN906051.1:sub-44551 CAGattccgggctgaccaccttgccagaggatatgatcggcggccgact 
                     -0>acgcctgattgacaagttgactataatagataatttgcaggctagg 
                        cctctgtcttctagtttcgaccgcttcggctggcatactccaggtg 


SPP00000021_2.0  199 HHRTTVSNVKMDILSYMRRQAAL                           
                     H RT V+ V+ D+L+Y++ Q+ +                           
                     HPRTPVTQVRRDVLAYLKSQSGI                           
KN906051.1:sub-44410 cccacgacgaaggcgtcatctga                           
                     acgcctcatggattcatacacgt                           
                     tctaactaagatgtccgaagcat                           


//
Making a E in phase 1 intron
Making a K in phase 2 intron
>KN906051.1:subseq(1063028,100125).pep
SQVDCYSSVAGTIYDYGALTIDESQFVHFKQYQGKTVLFVNVATYXGLTMQYLELNALQE
ELGNNGFVILGFPCNQFGLQEPGSNEEILKGLKCVRPGGGFTPNFQIFEKGDINGKKEQK
IYTFLKNSCPPVGDLFGNPQNRLFWEPLKVNDVKWNFEKFLVGPDGRPVKRWHPRTPVTQ
VRRDVLAYLKSQSGI
//
>KN906051.1:subseq(1063028,100125).[54186:44340].sp
TCTCAGGTTGACTGCTACAGCTCTGTGGCTGGAACCATCTATGACTATGGTGCCCTCACT
ATAGACGAAAGCCAGTTCGTCCACTTCAAGCAATATCAGGGGAAGACTGTGCTGTTTGTG
AATGTGGCCACTTACTGAGGGTTAACCATGCAGTACCTAGAACTGAATGCACTACAAGAA
GAACTGGGAAATAATGGGTTTGTCATCTTGGGTTTTCCCTGCAATCAATTTGGTCTACAG
GAACCAGGAAGCAATGAAGAAATCCTTAAAGGATTAAAATGTGTGCGTCCTGGTGGTGGC
TTCACTCCAAATTTCCAGATATTTGAGAAAGGAGACATTAACGGGAAGAAAGAACAGAAA
ATATACACCTTCTTGAAGAACTCCTGTCCCCCTGTGGGTGACCTTTTTGGCAATCCACAG
AATCGTCTTTTCTGGGAACCCCTCAAGGTCAATGATGTCAAGTGGAACTTTGAGAAGTTC
CTAGTTGGACCCGATGGCCGCCCAGTGAAGCGTTGGCATCCCCGTACACCAGTCACTCAA
GTAAGGAGAGATGTGCTTGCCTACCTGAAATCACAGTCCGGAATT
//
KN906051.1:subseq(1063028,100125)	GeneWise	match	54186	44342	274.05	-	.	KN906051.1:subseq(1063028,100125)-genewise-prediction-1
KN906051.1:subseq(1063028,100125)	GeneWise	cds	54186	54027	0.00	-	0	KN906051.1:subseq(1063028,100125)-genewise-prediction-1
KN906051.1:subseq(1063028,100125)	GeneWise	intron	54026	50125	0.00	-	.	KN906051.1:subseq(1063028,100125)-genewise-prediction-1
KN906051.1:subseq(1063028,100125)	GeneWise	cds	50124	50007	0.00	-	2	KN906051.1:subseq(1063028,100125)-genewise-prediction-1
KN906051.1:subseq(1063028,100125)	GeneWise	intron	50006	46258	0.00	-	.	KN906051.1:subseq(1063028,100125)-genewise-prediction-1
KN906051.1:subseq(1063028,100125)	GeneWise	cds	46257	46158	0.00	-	1	KN906051.1:subseq(1063028,100125)-genewise-prediction-1
KN906051.1:subseq(1063028,100125)	GeneWise	intron	46157	44549	0.00	-	.	KN906051.1:subseq(1063028,100125)-genewise-prediction-1
KN906051.1:subseq(1063028,100125)	GeneWise	cds	44548	44342	0.00	-	0	KN906051.1:subseq(1063028,100125)-genewise-prediction-1
//
