
genewise output
Score 20.51 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SPP00002884_2.0   93 SEIIQLLKDLGFYRKSSPDAL                             
                     SEI+Q  + LGF    +PD L                             
                     SEILQAQEHLGFLSYKTPDPL                             
KN906047.1:subs46752 tgaccgcgccgtcttaacgct                             
                     cattacaaatgttcaaccact                             
                     tatggaggttcttttacatta                             


//
>KN906047.1:subseq(591167,100077).pep
SEILQAQEHLGFLSYKTPDPL
//
>KN906047.1:subseq(591167,100077).[46752:46814].sp
TCTGAAATTCTGCAGGCACAGGAGCATCTTGGCTTTCTTTCTTATAAAACCCCAGATCCT
TTA
//
KN906047.1:subseq(591167,100077)	GeneWise	match	46752	46814	20.51	+	.	KN906047.1:subseq(591167,100077)-genewise-prediction-1
KN906047.1:subseq(591167,100077)	GeneWise	cds	46752	46814	0.00	+	0	KN906047.1:subseq(591167,100077)-genewise-prediction-1
//

genewise output
Score 146.45 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SPP00002884_2.0    1 MWRPLLLLGLLQPILGYQIDWNKLDRIARGKVE                 
                     MW PLLL GL QP+LGY+IDWNKL+++AR KVE                 
                     MWLPLLLFGLFQPLLGYEIDWNKLEKMARAKVE                 
KN906047.1:sub-63484 atcctcctgctccttgtgagtaatgaagcgagg                 
                     tgtcttttgttacttgaatagaataatcgcata                 
                     gggagggtcctgcggctatcgcgaaggagaggg                 


SPP00002884_2.0   34                        SCGGXQLNRLKE               
                                            SCGGXQLNRLKE               
                                            SCGGXQLNRLKE               
KN906047.1:sub-63385 GTGAGTG  Intron 1   CAGttggtccaacag               
                     <0-----[63385:63149]-0>cggggatagtaa               
                                            atcaagccggag               


SPP00002884_2.0   46                        VKAFVTDDLPL                
                                            VKAFV +D+PL                
                                            VKAFVQEDIPL                
KN906047.1:sub-63112 GTAAGAT  Intron 2   CAGgagtgcggacc                
                     <0-----[63112:52314]-0>tacttaaatct                
                                            ggcctggcctt                


SPP00002884_2.0   57                           HNLEMKHIPGADPELVLITSKYE 
                                               HNLEMKHIPGADPELVLI+S Y+ 
                                Y:Y[tat]       HNLEMKHIPGADPELVLISSHYK 
KN906047.1:sub-52280 TAGTATCCT  Intron 3   CAGTcacgaacacgggcgcgcattcta 
                       <2-----[52278:50079]-2> aatataatcgcacattttccaaa 
                                               cctgggtattactaaataccctg 


SPP00002884_2.0   81 ELE                       RIPLRDMKRSEIIQLLKDLGFYR 
                     ELE                       RIPL +MKR+EI QLLKDLGFY+ 
                     ELE                       RIPLTEMKRTEINQLLKDLGFYK 
KN906047.1:sub-50008 gcgGTAAGTG  Intron 4   CAGaaccagaaaagaacctagcgtta 
                     ata<0-----[49999:46861]-0>gtctcatagcataattaatgtaa 
                     agg                       gtactaggatatcgcagtggttg 


SPP00002884_2.0  107 KSSPDALVPAEFKMAPAR                                
                     K S DA VPAEF+MAPA+                                
                     KESQDAPVPAEFQMAPAK                                
KN906047.1:sub-46791 agacggcgcggtcagcga                                
                     aagaacctccatatccca                                
                     aacatttgtaatggatag                                


//
Making a Y in phase 2 intron
>KN906047.1:subseq(591167,100077).pep
MWLPLLLFGLFQPLLGYEIDWNKLEKMARAKVESCGGXQLNRLKEVKAFVQEDIPLYHNL
EMKHIPGADPELVLISSHYKELERIPLTEMKRTEINQLLKDLGFYKKESQDAPVPAEFQM
APAK
//
>KN906047.1:subseq(591167,100077).[63484:46736].sp
ATGTGGCTGCCATTGCTGCTGTTTGGCCTCTTTCAGCCCTTGTTGGGCTATGAAATTGAC
TGGAACAAGTTAGAAAAGATGGCACGGGCAAAGGTGGAGTCATGTGGCGGATGACAGCTC
AACAGGCTGAAAGAGGTGAAGGCCTTCGTTCAGGAGGACATCCCTCTTTATCACAACCTT
GAGATGAAGCATATACCTGGTGCAGACCCTGAACTAGTACTTATATCCTCCCACTATAAG
GAACTGGAGAGGATTCCACTCACTGAAATGAAGAGAACTGAAATTAACCAGCTCTTAAAG
GATCTGGGGTTTTATAAGAAAGAAAGCCAAGATGCTCCTGTGCCTGCAGAATTTCAGATG
GCACCTGCAAAG
//
KN906047.1:subseq(591167,100077)	GeneWise	match	63484	46738	146.45	-	.	KN906047.1:subseq(591167,100077)-genewise-prediction-1
KN906047.1:subseq(591167,100077)	GeneWise	cds	63484	63386	0.00	-	0	KN906047.1:subseq(591167,100077)-genewise-prediction-1
KN906047.1:subseq(591167,100077)	GeneWise	intron	63385	63149	0.00	-	.	KN906047.1:subseq(591167,100077)-genewise-prediction-1
KN906047.1:subseq(591167,100077)	GeneWise	cds	63148	63113	0.00	-	0	KN906047.1:subseq(591167,100077)-genewise-prediction-1
KN906047.1:subseq(591167,100077)	GeneWise	intron	63112	52314	0.00	-	.	KN906047.1:subseq(591167,100077)-genewise-prediction-1
KN906047.1:subseq(591167,100077)	GeneWise	cds	52313	52279	0.00	-	0	KN906047.1:subseq(591167,100077)-genewise-prediction-1
KN906047.1:subseq(591167,100077)	GeneWise	intron	52278	50079	0.00	-	.	KN906047.1:subseq(591167,100077)-genewise-prediction-1
KN906047.1:subseq(591167,100077)	GeneWise	cds	50078	50000	0.00	-	1	KN906047.1:subseq(591167,100077)-genewise-prediction-1
KN906047.1:subseq(591167,100077)	GeneWise	intron	49999	46861	0.00	-	.	KN906047.1:subseq(591167,100077)-genewise-prediction-1
KN906047.1:subseq(591167,100077)	GeneWise	cds	46860	46738	0.00	-	0	KN906047.1:subseq(591167,100077)-genewise-prediction-1
//
