
genewise output
Score 830.84 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SPP00000061_2.0    1 MSTRESFNPESYELDKSFRLTRFTELKGTGCKVPQDVLQKLLESLQENH 
                     MS RESFNPESYELDKSFRLTRF ELKGTGCKVPQDVLQKLLESLQENH 
                     MSVRESFNPESYELDKSFRLTRFAELKGTGCKVPQDVLQKLLESLQENH 
KN905976.1:subs30344 atgcgttacgatgcgaatccactggcagagtagccggtcatcgttcgac 
                     tctgactacagaataagtgtcgtcatagcggatcaattaattactaaaa 
                     gtcgatcttattgtcgcccgtctagtacttcattataggagaatggatc 


SPP00000061_2.0   50 FQEDEQFLGAVMPRL                          IGMDTCVI 
                     FQ++EQFLGAVMPRL                          IGMDTCVI 
                     FQDEEQFLGAVMPRL          G:G[ggt]        IGMDTCVI 
KN905976.1:subs30491 tcgggctcgggacacGGTAAGTG  Intron 1   CAGGTagagatga 
                     taaaaattgcttcgt <1-----[30537:40331]-1>  tgtacgtt 
                     tatagattgttgagg                          tcgcacct 


SPP00000061_2.0   74 PLRHGGLSLVQTTDYIYPIVDDPYMM                        
                     PLRHGGLSLVQTTDYIYPIVDDPYMM                        
                     PLRHGGLSLVQTTDYIYPIVDDPYMM                        
KN905976.1:subs40358 ctacggcttgcaagtatcagggctaaGTGAGTG  Intron 2   CAG 
                     ctgaggtcttaccaatacttaacatt<0-----[40436:44026]-0> 
                     taattcttgtatatcttctattttgg                        


SPP00000061_2.0  100 GRIACANVLSDLYAMGVTECDNMLMLLGVSNKMTDR              
                     GRIACANVLSDLYAMGVTECDNMLMLLGVSNK+TDR              
                     GRIACANVLSDLYAMGVTECDNMLMLLGVSNKLTDR              
KN905976.1:subs44027 gcagtgagtagctgaggagtgaacaccggaaacagc              
                     ggtcgcattgatactgtcagaatttttgtgaatcag              
                     agaatataatcttagacaatccgtggtccttagttg              


SPP00000061_2.0  136                        ERDKVMPLIIQGFKDAAEEAGTSVTG 
                                            ERDKVMPLIIQGFKDAAEEAGTSVTG 
                                            ERDKVMPLIIQGFKDAAEEAGTSVTG 
KN905976.1:subs44135 GTAGGTA  Intron 3   TAGgagagaccaacgtagggggggatgag 
                     <0-----[44135:48119]-0>agaattctttagtaaccaacgcctcg 
                                            agcgggtctcgccgtaagaaagttga 


SPP00000061_2.0  162 GQTVLNPWIVLGGVATTVCQPNEFI                         
                     GQTVLNPW+VLGGVATTVCQPNEFI                         
                     GQTVLNPWVVLGGVATTVCQPNEFI           M:I[att]      
KN905976.1:subs48198 gcagcactggcggggaagtccagtaATGTAAGTT  Intron 4      
                     gacttacgtttggtccctgacaatt  <2-----[48275:50016]   
                     agtaattgatgaagtatttattacc                         


SPP00000061_2.0  187     PDNAVPGDVLVLTKPLGTQVAVAVHQWLDI                
                          D+AVPGDVLVLTKPLGTQVAVAVHQWLDI                
                         ADSAVPGDVLVLTKPLGTQVAVAVHQWLDI                
KN905976.1:subs50014 CAGTggaggcgggcgcaactgacgggggcctcga                
                     -2> cagctcgattttcactgcatctctaagtat                
                         tcttaaatatagagtggtataaattgggtt                


SPP00000061_2.0  218                        PEKWNKIKLVVTQEDVELAYQEAMMN 
                                            PEKWNKIKLVVTQEDVELAYQEAMMN 
                                            PEKWNKIKLVVTQEDVELAYQEAMMN 
KN905976.1:subs50108 GTAAGTA  Intron 5   CAGcgataaaatggacggggtgtcggaaa 
                     <0-----[50108:53215]-0>caagaatatttcaaatatcaaactta 
                                            aaagtaaagggcgatgggacggaggc 


SPP00000061_2.0  244 MARLNRT                          AGLMHTFNAHAATDIT 
                     MARLNRT                          AGLMHTFNAHAATDIT 
                     MARLNRT          A:A[gct]        AGLMHTFNAHAATDIT 
KN905976.1:subs53294 agccacaGGTACTAA  Intron 6   TAGCTggcacatagcggagaa 
                     tcgtagc <1-----[53316:61517]-1>  cgttactacacccatc 
                     gtaacat                          ttcgcattatctacaa 


SPP00000061_2.0  268 GFGILGHAQNLAKQQRNEVSFVIHNLPVLAKMAAVSKACGNMFGLMHGT 
                     GFGILGHAQNLAKQQRNEVSFVIHNLPVLAKMAAVSKACGNMFGLMHG+ 
                     GFGILGHAQNLAKQQRNEVSFVIHNLPVLAKMAAVSKACGNMFGLMHGS 
KN905976.1:subs61568 gtgatgcgcatgacccaggttgacatcgtgaagggaagtgaatgcacgt 
                     gtgttgacaatcaaagaatctttaatcttcatcctgacggattgttagc 
                     gtataataacgtagaatatctatttgtagtggttccgatgtgtctgtct 


SPP00000061_2.0  317 CPETS                          GLLICLPREQAARFCAEI 
                     CPETS                          GLLICLPREQAARFCAEI 
                     CPETS          G:G[gga]        GLLICLPREQAARFCAEI 
KN905976.1:subs61715 tcgatGGTAAGTA  Intron 7   CAGGAgctatcccgcggcttgga 
                     gcacc <1-----[61731:62900]-1>  gtttgtcgaaccgtgcat 
                     ttaca                          ttgctgaaagtaccttaa 


SPP00000061_2.0  341 KSPKYGEGHQAWIIGIVEKGNRTARIIDKPRIIEVAPQVATQNVNPTPG 
                     KSPKYGEGHQAWIIGIVEKGNRTARIIDKPRIIEVAPQVATQNVNPTPG 
                     KSPKYGEGHQAWIIGIVEKGNRTARIIDKPRIIEVAPQVATQNVNPTPG 
KN905976.1:subs62957 atcatgggccgtaagaggagacagaaagaccaagggccggacagacacg 
                     accaagagaacgttgttaagagccgttaacgttatccatccaatacccg 
                     accgtaattaagttctaagcctccacacgaactatctagttattcattt 


SPP00000061_2.0  390 ATS                                               
                     ATS                                               
                     ATS                                               
KN905976.1:subs63104 gat                                               
                     ccc                                               
                     ctt                                               


//
Making a G in phase 1 intron
Making a I in phase 2 intron
Making a A in phase 1 intron
Making a G in phase 1 intron
>KN905976.1:subseq(891405,100107).pep
MSVRESFNPESYELDKSFRLTRFAELKGTGCKVPQDVLQKLLESLQENHFQDEEQFLGAV
MPRLGIGMDTCVIPLRHGGLSLVQTTDYIYPIVDDPYMMGRIACANVLSDLYAMGVTECD
NMLMLLGVSNKLTDRERDKVMPLIIQGFKDAAEEAGTSVTGGQTVLNPWVVLGGVATTVC
QPNEFIIADSAVPGDVLVLTKPLGTQVAVAVHQWLDIPEKWNKIKLVVTQEDVELAYQEA
MMNMARLNRTAAGLMHTFNAHAATDITGFGILGHAQNLAKQQRNEVSFVIHNLPVLAKMA
AVSKACGNMFGLMHGSCPETSGGLLICLPREQAARFCAEIKSPKYGEGHQAWIIGIVEKG
NRTARIIDKPRIIEVAPQVATQNVNPTPGATS
//
>KN905976.1:subseq(891405,100107).[30344:63112].sp
ATGTCTGTCCGGGAATCTTTCAATCCTGAAAGTTATGAGCTTGACAAGAGCTTCCGCCTG
ACTCGCTTTGCAGAGCTTAAAGGCACTGGTTGCAAAGTTCCTCAAGATGTATTGCAGAAA
TTGCTAGAATCTTTGCAGGAAAATCACTTTCAAGATGAAGAGCAATTTCTTGGGGCTGTT
ATGCCAAGGCTGGGTATTGGCATGGACACATGCGTCATTCCTTTAAGACATGGTGGCCTT
TCTTTGGTTCAAACTACAGATTACATTTATCCCATTGTAGATGATCCTTATATGATGGGA
CGGATAGCATGTGCAAATGTATTAAGTGACCTTTATGCAATGGGAGTCACAGAATGTGAC
AACATGCTTATGCTGCTTGGCGTCAGTAATAAACTGACTGATCGGGAAAGGGACAAGGTG
ATGCCTCTCATTATCCAGGGCTTCAAGGATGCAGCAGAGGAAGCAGGAACGTCTGTTACG
GGAGGACAGACTGTACTAAATCCTTGGGTAGTTCTGGGAGGAGTGGCTACAACTGTTTGT
CAACCTAATGAATTCATCATTGCTGACAGTGCTGTACCAGGAGATGTACTTGTACTGACA
AAGCCTTTGGGGACTCAAGTTGCAGTAGCAGTTCATCAGTGGCTGGATATTCCAGAAAAA
TGGAATAAAATAAAATTGGTGGTGACCCAGGAAGATGTGGAGTTGGCATACCAGGAGGCA
ATGATGAACATGGCTCGACTAAACCGAACTGCTGCTGGTCTCATGCACACATTTAATGCA
CATGCCGCTACAGACATAACAGGGTTTGGAATTTTAGGACATGCACAAAACTTGGCTAAA
CAGCAACGAAATGAAGTTTCCTTTGTAATTCATAATTTGCCTGTATTGGCTAAGATGGCT
GCTGTCAGCAAGGCATGTGGGAATATGTTTGGCCTTATGCATGGCTCTTGTCCTGAAACC
TCAGGAGGTCTTTTGATCTGTCTGCCACGAGAACAGGCTGCACGCTTCTGTGCTGAAATA
AAATCCCCCAAGTATGGAGAAGGTCATCAAGCATGGATTATTGGCATTGTAGAAAAGGGC
AACCGTACCGCCAGAATCATAGACAAGCCACGAATCATTGAAGTTGCCCCTCAAGTGGCT
ACTCAAAATGTTAACCCAACTCCTGGTGCCACTTCT
//
KN905976.1:subseq(891405,100107)	GeneWise	match	30344	63112	830.84	+	.	KN905976.1:subseq(891405,100107)-genewise-prediction-1
KN905976.1:subseq(891405,100107)	GeneWise	cds	30344	30536	0.00	+	0	KN905976.1:subseq(891405,100107)-genewise-prediction-1
KN905976.1:subseq(891405,100107)	GeneWise	intron	30537	40331	0.00	+	.	KN905976.1:subseq(891405,100107)-genewise-prediction-1
KN905976.1:subseq(891405,100107)	GeneWise	cds	40332	40435	0.00	+	2	KN905976.1:subseq(891405,100107)-genewise-prediction-1
KN905976.1:subseq(891405,100107)	GeneWise	intron	40436	44026	0.00	+	.	KN905976.1:subseq(891405,100107)-genewise-prediction-1
KN905976.1:subseq(891405,100107)	GeneWise	cds	44027	44134	0.00	+	0	KN905976.1:subseq(891405,100107)-genewise-prediction-1
KN905976.1:subseq(891405,100107)	GeneWise	intron	44135	48119	0.00	+	.	KN905976.1:subseq(891405,100107)-genewise-prediction-1
KN905976.1:subseq(891405,100107)	GeneWise	cds	48120	48274	0.00	+	0	KN905976.1:subseq(891405,100107)-genewise-prediction-1
KN905976.1:subseq(891405,100107)	GeneWise	intron	48275	50016	0.00	+	.	KN905976.1:subseq(891405,100107)-genewise-prediction-1
KN905976.1:subseq(891405,100107)	GeneWise	cds	50017	50107	0.00	+	1	KN905976.1:subseq(891405,100107)-genewise-prediction-1
KN905976.1:subseq(891405,100107)	GeneWise	intron	50108	53215	0.00	+	.	KN905976.1:subseq(891405,100107)-genewise-prediction-1
KN905976.1:subseq(891405,100107)	GeneWise	cds	53216	53315	0.00	+	0	KN905976.1:subseq(891405,100107)-genewise-prediction-1
KN905976.1:subseq(891405,100107)	GeneWise	intron	53316	61517	0.00	+	.	KN905976.1:subseq(891405,100107)-genewise-prediction-1
KN905976.1:subseq(891405,100107)	GeneWise	cds	61518	61730	0.00	+	2	KN905976.1:subseq(891405,100107)-genewise-prediction-1
KN905976.1:subseq(891405,100107)	GeneWise	intron	61731	62900	0.00	+	.	KN905976.1:subseq(891405,100107)-genewise-prediction-1
KN905976.1:subseq(891405,100107)	GeneWise	cds	62901	63112	0.00	+	2	KN905976.1:subseq(891405,100107)-genewise-prediction-1
//

genewise output
Score 20.14 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SPP00000061_2.0  357 VEKGNRTARIIDKPRII                                 
                     V+ G +  ++ID PR++                                 
                     VQGGRKLCKVIDSPRVV                                 
KN905976.1:sub-92910 gcggaactagagtcagg                                 
                     tagggatgattaccgtt                                 
                     gaaggagcgatcttaac                                 


//
>KN905976.1:subseq(891405,100107).pep
VQGGRKLCKVIDSPRVV
//
>KN905976.1:subseq(891405,100107).[92910:92858].sp
GTGCAAGGAGGGAGGAAACTGTGCAAGGTAATTGACTCTCCTAGAGTAGTC
//
KN905976.1:subseq(891405,100107)	GeneWise	match	92910	92860	20.14	-	.	KN905976.1:subseq(891405,100107)-genewise-prediction-1
KN905976.1:subseq(891405,100107)	GeneWise	cds	92910	92860	0.00	-	0	KN905976.1:subseq(891405,100107)-genewise-prediction-1
//
