
genewise output
Score 161.19 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SPP00002907_2.0  177 DSLGFCQIYLHCPVESCLLRNKGRPVSIPEGTIWLMDKKIQKPNPEKNS 
                     DSLGFCQ+YL C VESCL RNKGR   + + TI LM++KI+KPNPEKN+ 
                     DSLGFCQLYLQCSVESCLQRNKGRQHPVTDKTILLMERKIEKPNPEKNT 
KN905975.1:subs47086 gtcgttcttccttggattcaaagacccgagaaaccagaaagacacgaaa 
                     actgtgatatagctaggtagaaggaactcaacttttagataacacaaac 
                     ttgactggtagcttgccgggtgcagttaacgacggggaacggcttggca 


SPP00002907_2.0  226 WEQNSLVLHSAQLIKAD                          PRIIKL 
                     WE+NSL L S+    AD                           +I  L 
                     WEENSLSLDSSGGGIAD           D:D[gat]       TQIHDL 
KN905975.1:subs47233 tggaactcgatgggaggGAGTAAGGA  Intron 1   TAGTacacgt 
                     gaaagtctagcgggtca  <2-----[47286:48632]-2> cataat 
                     gagctacgcctaaaaat                          aacttg 


SPP00002907_2.0  250 VNQAMANPLRPLQENLEIK                       DKDRAIT 
                     +N+A+ NP+RPL ++ E +                       ++DR I  
                     LNRALENPVRPLDDDCEER                       ERDREIC 
KN905975.1:subs48652 cacgcgacgcccgggtggcGTAGGTA  Intron 2   CAGgcgcgat 
                     tagctaactgctaaagaag<0-----[48709:50002]-0>agagatg 
                     gtacgactggcactctgag                       agttact 


SPP00002907_2.0  276 AASILHQADQSIRRFISETMRRVK                          
                     AA+++HQADQS+RR+I+ETM+ VK                          
                     AANLIHQADQSLRRLIAETMQTVK          G:G[ggg]        
KN905975.1:subs50024 ggacaccggcaccacaggaacagaGGTAACGG  Intron 3        
                     ccattaacaagtggttcactacta <1-----[50097:53408]     
                     gcttttgatataagccaatggaga                          


SPP00002907_2.0  300      AVSAQEMKVVAQELQSAKSEFLEDLKRSLSEKGIQPTTERSAAT 
                           V+++++K +AQELQ  KS+ LE L+  ++ + + P         
                          TVASKDIKRIAQELQCVKSKALEQLREHITVQTVLPAKADRDFN 
KN905975.1:subs53406 CAGGGaggaagaaaagcgcctgatagcgctagcaagcagccgaggagta 
                     -1>  ctcgaatagtcaatagtacactaatgaatctacttccacagata 
                          attcgtaaattggcgtagtatgaaaggtctagtcatcaacatct 


SPP00002907_2.0  345 IVSLFKEQTDHIVQPFLTAEQSSCPEPQLD                    
                     + + F E+ + I+QP+L   Q     P+LD                    
                     VQAYFTEEKERILQPYLCQSQ----DPRLD                    
KN905975.1:subs53543 gcgttaggagcatcctttctc    gcacg                    
                     tacatcaaaagttacatgaca    acgta                    
                     gatttcaaaggagggcgcgtg    taggt                    


//
Making a D in phase 2 intron
Making a G in phase 1 intron
>KN905975.1:subseq(206858,100098).pep
DSLGFCQLYLQCSVESCLQRNKGRQHPVTDKTILLMERKIEKPNPEKNTWEENSLSLDSS
GGGIADDTQIHDLLNRALENPVRPLDDDCEERERDREICAANLIHQADQSLRRLIAETMQ
TVKGTVASKDIKRIAQELQCVKSKALEQLREHITVQTVLPAKADRDFNVQAYFTEEKERI
LQPYLCQSQDPRLD
//
>KN905975.1:subseq(206858,100098).[47086:53620].sp
GATTCTCTGGGATTCTGTCAGTTGTATCTACAGTGCTCTGTTGAGAGCTGCTTGCAGAGG
AATAAGGGCAGACAGCATCCTGTAACAGACAAGACAATCCTGCTGATGGAGAGAAAAATC
GAGAAGCCCAATCCTGAGAAGAACACATGGGAAGAGAACAGTCTATCCCTGGACAGCTCT
GGAGGAGGAATAGCAGATGATACACAAATCCATGATTTGCTGAATCGAGCCCTGGAAAAC
CCTGTGCGGCCCCTAGACGATGACTGTGAGGAACGGGAACGGGATCGTGAAATCTGTGCG
GCCAATCTTATTCATCAGGCAGATCAAAGTCTACGAAGGCTCATCGCAGAAACTATGCAG
ACAGTGAAAGGGACAGTTGCTAGCAAGGATATAAAAAGAATTGCTCAGGAGCTCCAGTGT
GTAAAGTCTAAAGCTCTGGAACAATTAAGGGAGCATATCACTGTACAGACTGTCCTACCT
GCCAAAGCAGACAGAGATTTCAATGTGCAAGCTTATTTTACCGAAGAAAAAGAGCGGATA
TTGCAGCCGTACTTGTGCCAGTCTCAGGATCCAAGGCTGGAT
//
KN905975.1:subseq(206858,100098)	GeneWise	match	47086	53620	164.18	+	.	KN905975.1:subseq(206858,100098)-genewise-prediction-1
KN905975.1:subseq(206858,100098)	GeneWise	cds	47086	47285	0.00	+	0	KN905975.1:subseq(206858,100098)-genewise-prediction-1
KN905975.1:subseq(206858,100098)	GeneWise	intron	47286	48632	0.00	+	.	KN905975.1:subseq(206858,100098)-genewise-prediction-1
KN905975.1:subseq(206858,100098)	GeneWise	cds	48633	48708	0.00	+	1	KN905975.1:subseq(206858,100098)-genewise-prediction-1
KN905975.1:subseq(206858,100098)	GeneWise	intron	48709	50002	0.00	+	.	KN905975.1:subseq(206858,100098)-genewise-prediction-1
KN905975.1:subseq(206858,100098)	GeneWise	cds	50003	50096	0.00	+	0	KN905975.1:subseq(206858,100098)-genewise-prediction-1
KN905975.1:subseq(206858,100098)	GeneWise	intron	50097	53408	0.00	+	.	KN905975.1:subseq(206858,100098)-genewise-prediction-1
KN905975.1:subseq(206858,100098)	GeneWise	cds	53409	53620	0.00	+	2	KN905975.1:subseq(206858,100098)-genewise-prediction-1
//

genewise output
Score 18.55 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SPP00002907_2.0   78 PEVSVIALSVYTYFLLPSIVI                             
                     P +S++A SV+ +F+L SI I                             
                     PSLSLVAASVF-FFMLFSIYI                             
KN905975.1:sub-30484 ctcttgggtgt ttacttata                             
                     cctcttccctt tttttctat                             
                     tcgcaataatt tcgttctta                             


//
>KN905975.1:subseq(206858,100098).pep
PSLSLVAASVFFFMLFSIYI
//
>KN905975.1:subseq(206858,100098).[30484:30423].sp
CCTTCCCTGTCCTTAGTAGCTGCATCAGTTTTTTTTTTCATGCTTTTTTCCATTTATATA
//
KN905975.1:subseq(206858,100098)	GeneWise	match	30484	30425	18.55	-	.	KN905975.1:subseq(206858,100098)-genewise-prediction-1
KN905975.1:subseq(206858,100098)	GeneWise	cds	30484	30425	0.00	-	0	KN905975.1:subseq(206858,100098)-genewise-prediction-1
//
