
genewise output
Score 19.80 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SPP00002886_2.0  506 WLRKYSVRLEKERGSVEDRKAFHEEH                        
                     WL++ SV   + +GSVE  + +   H                        
                     WLKQGSVGSHQHQGSVESHQGYVGSH                        
KN905923.1:subs63283 ttacgtggtccccgtggtccgtggtc                        
                     gtaagctgcaaaagctacaagatgca                        
                     gaggctagtcgcgttagtcgctggtt                        


//
>KN905923.1:subseq(1891841,100194).pep
WLKQGSVGSHQHQGSVESHQGYVGSH
//
>KN905923.1:subseq(1891841,100194).[63283:63360].sp
TGGTTAAAGCAGGGCTCTGTAGGGTCTCACCAGCACCAGGGTTCTGTAGAGTCTCACCAG
GGCTATGTGGGGTCTCAT
//
KN905923.1:subseq(1891841,100194)	GeneWise	match	63283	63360	19.80	+	.	KN905923.1:subseq(1891841,100194)-genewise-prediction-1
KN905923.1:subseq(1891841,100194)	GeneWise	cds	63283	63360	0.00	+	0	KN905923.1:subseq(1891841,100194)-genewise-prediction-1
//

genewise output
Score 1021.44 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SPP00002886_2.0    1 LTFDNLALRSLPVEPGDGTEEEARTPRQVPGACFSRVRPTPLLNPTVVA 
                     L FDN ALR LPVEPGDG +++A   R+VPGACFS VRPTPL NP VVA 
                     LRFDNRALRCLPVEPGDGQDDDAVRSREVPGACFSPVRPTPLENPQVVA 
KN905923.1:sub-61676 cctgacgccttcggcgggcgggggctcggcggtttcgccaccgaccggg 
                     tgtaagctggtctacgagaaaactgcgatcgcgtcctgccctaacattc 
                     gtctcgggctggggcgcggctccgcccgacgcccagcaccgagccgggg 


SPP00002886_2.0   50 LSRSALSLLGLQVGEEDE-EATEYFSGNRLLPGSEPAAHCYCGHQFGNF 
                     LS+ AL+LLG+Q+G+ED+ EA  YFSGNRLLPGS+PAAHCYCGHQFG+F 
                     LSQPALALLGVQLGDEDQDEAALYFSGNRLLPGSQPAAHCYCGHQFGSF 
KN905923.1:sub-61529 ctccgcgccggccggggcggggcttagacctcgtccggctttgcctgat 
                     tcacctcttgtatgaaaaaacctatggagttcgcacccagaggaatggt 
                     gcggggtgccggcacacgcgatgtcctcaaaccagcccccccatgcgcc 


SPP00002886_2.0   98 AGQLGDGAAMYLGEVVNATGKRWEIQLKGAGLTPYSRQQ           
                     AGQLGDGAAMYLGEV+N  G+RWEIQLKGAGLTPYSRQ            
                     AGQLGDGAAMYLGEVLNPAGERWEIQLKGAGLTPYSRQV           
KN905923.1:sub-61382 ggccgggggatcgggcacgggatgaccagggcacttacg           
                     cgatgagcctatgattaccgaggatatagcgtccacgat           
                     cgggttcccgcgaaagcgcgggggtagaacccctccgac           


SPP00002886_2.0  137                           DGRKVLRSSIREFLCSEAMSHLG 
                                               DGRKVLRS+IREFLCSEAM HLG 
                               A:S[tca]        DGRKVLRSTIREFLCSEAMFHLG 
KN905923.1:sub-61265 TGTTCATA  Intron 1   AAGCAggaagtctaaagtctaggatccg 
                      <1-----[61264:60452]-1>  aggattgcctgattggacttatg 
                                               tcaaggaccaagcgctacgtcta 


SPP00002886_2.0  161 IPSTRAGSCVTADSTVIRDIYYDGNPKKEKCTVVSRIAPTFL        
                     IP+TRA SCVT+DSTVIRDIYYDGNPKKEKCTVV R+APTFL        
                     IPTTRAVSCVTSDSTVIRDIYYDGNPKKEKCTVVLRVAPTFL        
KN905923.1:sub-60380 acaaaggttgatgtagaagattggacaagataggtcggcatc        
                     tcccgctcgtccaccttgataaagacaaaagctttgtccctt        
                     aagaatgatccctctgcacatctcccgaagcaatacctctta        


SPP00002886_2.0  203                           FGSFEIFKPTDEFTGRKGPSVDR 
                                               FGSFEIFKP DEFTGR+GPSV+R 
                                R:R[agg]       FGSFEIFKPVDEFTGRQGPSVNR 
KN905923.1:sub-60254 AGGTAATTA  Intron 2   CAGGtgttgatacgggtagccgcagaa 
                       <2-----[60252:58935]-2> tgctattactaatcggagcgtag 
                                               taatattgattatataatctcca 


SPP00002886_2.0  227 NDIRIQMLDYVIRTFYPDIQEKHAGNNTEKNAAFFRE             
                     NDIRIQMLDYVI TFYPDIQEK+AGNN E+NA FFRE             
                     NDIRIQMLDYVIGTFYPDIQEKYAGNNMERNAVFFRE             
KN905923.1:sub-58864 agacacatgtgagattcgacgatggaaagaaggttag             
                     aatgtattaattgctacataaaacgaatagactttga             
                     tccatgggttttcaccacagggtaaccggactgtcag             


SPP00002886_2.0  264                        ITKRTARLVAEWQCVGFCHGVLNTDN 
                                            IT+RTAR+VAEWQCVGFCHGVLNTDN 
                                            ITRRTARMVAEWQCVGFCHGVLNTDN 
KN905923.1:sub-58753 GTAGTGG  Intron 3   TAGaaaaagcagggtctggttcggtaaga 
                     <0-----[58753:57840]-0>tcggccgttcagagtgtgagttacaa 
                                            aaggaaagttagattatcttggtttc 


SPP00002886_2.0  290 MSIVGLTIDYGPFGFID                          YDPEYI 
                     M+IVGLTIDYGPFGF+D                          YDP++I 
                     MNIVGLTIDYGPFGFLD           R:R[agg]       YDPDHI 
KN905923.1:sub-57761 aaaggcaagtgctgttgAGGTTTGTA  Intron 4   TAGGtgcgca 
                     tattgtctaagctgtta  <2-----[57708:55796]-2> aacaat 
                     gcttgtttttattctgc                          tcattt 


SPP00002886_2.0  314 CNGSDNMGRYAYNKQPEICKWNLGKLAEALIPELPLSISQSILDDEYDA 
                     CNGSDNMGRYAYNKQP ICKWNLGK AEAL+PEL L IS++IL++EYDA 
                     CNGSDNMGRYAYNKQPAICKWNLGKFAEALVPELSLDISKNILEEEYDA 
KN905923.1:sub-55776 tagtgaagctgtaaccgatatatgatgggcgcgcttgaaaaacgggtgg 
                     gagcaatggacaaaacctgagatgatcacttcatctatgaattaaaaac 
                     tcctttgattcccggagctggtaagtcgtgctagcgcatatataaatta 


SPP00002886_2.0  363 EFQNHYMEKMRKKLGLVRLKLDDDSHLVSDLLETMNIT            
                     EFQ HY++KMRKKLGL++L+L++DS L+SDL++TM +T            
                     EFQKHYLQKMRKKLGLLKLELEEDSKLISDLMDTMYLT            
KN905923.1:sub-55629 gtcacttcaaaaacgccacgcgggaatatgcagaatca            
                     ataaaataatgaatgttatataaagattcattactatc            
                     gtaactggagggggtttgtagggccaacttagccgtga            


SPP00002886_2.0  401                           SDFTNTFRVLSKFSGDEAEIQDF 
                                               SDFTNTFRVLSKFSG  ++I DF 
                               G:G[ggc]        SDFTNTFRVLSKFSGHASDIDDF 
KN905923.1:sub-55515 GGTGAGAT  Intron 5   TAGGCtgtaaatcgcaattgcgtgaggt 
                      <1-----[55514:54853]-1>  catcactgttgatcgaccataat 
                                               attcctcatctacaaccttttcc 


SPP00002886_2.0  425 LNIIIEQCASVEELKLVFKPKMDP                          
                     L+ I +QCA++EELK+ +KPKMDP                          
                     LSTITQQCATLEELKVFYKPKMDP           R:R[aga]       
KN905923.1:sub-54781 taaaacctgatggtagttacaagcAGGTAAAAT  Intron 6       
                     tgctcaagcctaatattaacatac  <2-----[54707:52896]    
                     gcactagttcggaagttcatagta                          


SPP00002886_2.0  449     QLSMMLMLAQSNPQLFSMIGTQSNINKELERIDQYTKLQETSADD 
                         QLS++LMLAQSNPQLF++IG+++NINKELE I+++ KLQ++S +D 
                         QLSVLLMLAQSNPQLFALIGSKANINKELENIEKFEKLQKSSGED 
KN905923.1:sub-52898 CAGAcctgtcacgcaaccttgtagtagaaaagcgaagatgaccataggg 
                     -2> atctttttcagacattcttgcacataaataataataataacggaa 
                         atagggggaacctaatagtgaaacacaggattagtaatgacctgt 


SPP00002886_2.0  495 LLKDNKKHWKEWLRKY                          VRLEKER 
                     LL +N++HWKEWL+KY                          VRLEKE+ 
                     LLNNNREHWKEWLQKY           S:S[agc]       VRLEKEQ 
KN905923.1:sub-52759 ccaaacgctagtccatAGGTATATT  Intron 7   CAGCgctgagc 
                     ttaaagaagaagtaaa  <2-----[52709:51523]-2> tgtaaaa 
                     agctcggcgaggtgat                          tcggaaa 


SPP00002886_2.0  519 GSVEDRKAFHEEHVKTMDSNNPSYILRNYIAQNAIDSAESGDFSE     
                        E  + +  E VK M+SNNP++ILRNYIAQNAI++AE+GDF+E     
                     EHSEASETLDAERVKNMNSNNPAHILRNYIAQNAIEAAENGDFTE     
KN905923.1:sub-51500 gctggagatgggcgaaaataacgcacaatagcagaggggaggtag     
                     aacacgactacagtaatacaaccattgaatcaactaccaagatca     
                     attattgtatagggacgtttcaaccgattatgtcagatgtaccag     


SPP00002886_2.0  564                        VKRVLQMLENPYQEGESCQSIADKSP 
                                            VKRVL++LENPY E E  + I + +  
                                            VKRVLKILENPY-EVEKEEEIPEHAE 
KN905923.1:sub-51365 GTAACGC  Intron 8   CAGgacgcaatgact gggagggacgcgg 
                     <0-----[51365:50192]-0>tagttattaaca ataaaaatcaaca 
                                            ggtcggtgattt acgggagtcatta 


SPP00002886_2.0  590 EEDVAVAASSVS--TNPSRLPYNSKPPLWATELCVT              
                     EE +   A ++S  TN S+LPY+SKPPLWATELCVT              
                     EERLEACALAISRPTNLSKLPYSSKPPLWATELCVT              
KN905923.1:sub-50116 ggccggtgtgatacaactacctaaaccctgagctga              
                     aagtacgctctcgccatcatcaggacctgccatgtc              
                     aatgatttgcttacacccatatccatatgtaaatcc              


//
Making a S in phase 1 intron
Making a R in phase 2 intron
Making a R in phase 2 intron
Making a G in phase 1 intron
Making a R in phase 2 intron
Making a S in phase 2 intron
>KN905923.1:subseq(1891841,100194).pep
LRFDNRALRCLPVEPGDGQDDDAVRSREVPGACFSPVRPTPLENPQVVALSQPALALLGV
QLGDEDQDEAALYFSGNRLLPGSQPAAHCYCGHQFGSFAGQLGDGAAMYLGEVLNPAGER
WEIQLKGAGLTPYSRQVSDGRKVLRSTIREFLCSEAMFHLGIPTTRAVSCVTSDSTVIRD
IYYDGNPKKEKCTVVLRVAPTFLRFGSFEIFKPVDEFTGRQGPSVNRNDIRIQMLDYVIG
TFYPDIQEKYAGNNMERNAVFFREITRRTARMVAEWQCVGFCHGVLNTDNMNIVGLTIDY
GPFGFLDRYDPDHICNGSDNMGRYAYNKQPAICKWNLGKFAEALVPELSLDISKNILEEE
YDAEFQKHYLQKMRKKLGLLKLELEEDSKLISDLMDTMYLTGSDFTNTFRVLSKFSGHAS
DIDDFLSTITQQCATLEELKVFYKPKMDPRQLSVLLMLAQSNPQLFALIGSKANINKELE
NIEKFEKLQKSSGEDLLNNNREHWKEWLQKYSVRLEKEQEHSEASETLDAERVKNMNSNN
PAHILRNYIAQNAIEAAENGDFTEVKRVLKILENPYEVEKEEEIPEHAEEERLEACALAI
SRPTNLSKLPYSSKPPLWATELCVT
//
>KN905923.1:subseq(1891841,100194).[61676:50007].sp
CTGCGTTTCGATAACCGGGCGCTGCGCTGTTTGCCGGTGGAGCCCGGGGACGGGCAGGAC
GATGACGCCGTGCGCTCCCGCGAGGTACCCGGGGCCTGCTTCTCACCGGTCCGACCCACC
CCGCTAGAGAACCCCCAGGTGGTGGCGCTGTCCCAGCCGGCGCTGGCTCTGCTCGGCGTG
CAGCTCGGAGACGAAGACCAGGACGAGGCAGCTCTGTATTTCAGCGGTAACCGACTATTA
CCCGGCTCACAGCCCGCCGCCCACTGCTACTGCGGACATCAGTTCGGGAGCTTCGCCGGG
CAGCTGGGTGATGGCGCCGCCATGTACCTGGGAGAAGTACTGAACCCGGCCGGGGAGAGG
TGGGAGATTCAACTGAAAGGAGCCGGCCTCACCCCTTACTCCAGGCAAGTCTCAGATGGC
AGAAAAGTGTTGCGATCCACCATAAGAGAGTTCCTGTGCAGTGAAGCCATGTTTCACCTT
GGAATACCAACGACAAGAGCTGTGTCATGTGTCACCTCCGATTCCACTGTGATCAGAGAC
ATATATTACGATGGCAACCCCAAGAAAGAAAAGTGCACAGTAGTTTTACGCGTCGCTCCC
ACTTTTCTAAGGTTTGGATCATTTGAAATTTTTAAGCCAGTTGATGAATTTACAGGTCGA
CAAGGTCCCAGTGTCAACAGAAATGACATCCGAATTCAGATGTTGGATTATGTTATTGGC
ACATTCTACCCAGACATACAGGAGAAGTATGCAGGAAACAACATGGAGAGAAACGCTGTG
TTTTTCAGAGAGATAACAAGGAGGACAGCACGAATGGTTGCTGAATGGCAATGTGTTGGA
TTTTGCCATGGTGTGTTGAATACTGATAACATGAACATTGTTGGGCTTACTATTGATTAT
GGACCTTTTGGCTTTTTGGACAGGTATGACCCAGATCATATTTGTAACGGCTCTGATAAT
ATGGGACGTTATGCCTACAACAAGCAGCCAGCGATCTGTAAGTGGAATTTAGGAAAGTTT
GCCGAGGCTCTGGTCCCTGAACTGTCCTTGGACATAAGTAAAAATATACTTGAAGAAGAA
TATGATGCAGAGTTTCAAAAACACTATTTGCAGAAAATGAGGAAGAAGCTGGGTCTTCTT
AAGCTTGAACTGGAGGAGGACAGCAAATTAATCTCTGATCTAATGGACACCATGTATCTG
ACAGGCTCAGATTTTACCAACACTTTCCGAGTTCTCAGTAAATTCTCAGGACACGCCTCT
GATATTGATGACTTCTTGAGCACAATCACTCAACAGTGTGCTACCTTGGAGGAATTAAAG
GTTTTTTACAAACCTAAAATGGATCCAAGACAACTTTCAGTGTTGCTGATGCTGGCACAA
AGCAACCCTCAATTATTTGCATTGATTGGGTCAAAAGCAAACATAAACAAAGAGCTGGAA
AATATTGAAAAGTTTGAAAAACTTCAGAAATCCAGCGGTGAGGATCTACTGAACAATAAC
CGGGAGCACTGGAAAGAGTGGCTTCAGAAATATAGCGTTCGCTTGGAGAAAGAACAAGAA
CATTCTGAAGCTAGTGAGACTTTAGATGCAGAGCGGGTGAAAAACATGAATTCTAATAAC
CCAGCACACATCCTGAGAAATTATATAGCTCAGAATGCCATAGAGGCAGCTGAGAATGGA
GACTTCACAGAGGTGAAGCGTGTCCTGAAGATTTTGGAAAATCCTTATGAAGTCGAGAAG
GAGGAAGAGATTCCCGAACATGCTGAAGAAGAACGTCTGGAAGCTTGTGCTTTGGCCATT
TCTAGACCCACAAACCTCTCCAAACTTCCATATAGCAGCAAACCTCCACTTTGGGCTACA
GAACTATGTGTCACC
//
KN905923.1:subseq(1891841,100194)	GeneWise	match	61676	50009	1022.44	-	.	KN905923.1:subseq(1891841,100194)-genewise-prediction-1
KN905923.1:subseq(1891841,100194)	GeneWise	cds	61676	61265	0.00	-	0	KN905923.1:subseq(1891841,100194)-genewise-prediction-1
KN905923.1:subseq(1891841,100194)	GeneWise	intron	61264	60452	0.00	-	.	KN905923.1:subseq(1891841,100194)-genewise-prediction-1
KN905923.1:subseq(1891841,100194)	GeneWise	cds	60451	60253	0.00	-	2	KN905923.1:subseq(1891841,100194)-genewise-prediction-1
KN905923.1:subseq(1891841,100194)	GeneWise	intron	60252	58935	0.00	-	.	KN905923.1:subseq(1891841,100194)-genewise-prediction-1
KN905923.1:subseq(1891841,100194)	GeneWise	cds	58934	58754	0.00	-	1	KN905923.1:subseq(1891841,100194)-genewise-prediction-1
KN905923.1:subseq(1891841,100194)	GeneWise	intron	58753	57840	0.00	-	.	KN905923.1:subseq(1891841,100194)-genewise-prediction-1
KN905923.1:subseq(1891841,100194)	GeneWise	cds	57839	57709	0.00	-	0	KN905923.1:subseq(1891841,100194)-genewise-prediction-1
KN905923.1:subseq(1891841,100194)	GeneWise	intron	57708	55796	0.00	-	.	KN905923.1:subseq(1891841,100194)-genewise-prediction-1
KN905923.1:subseq(1891841,100194)	GeneWise	cds	55795	55515	0.00	-	1	KN905923.1:subseq(1891841,100194)-genewise-prediction-1
KN905923.1:subseq(1891841,100194)	GeneWise	intron	55514	54853	0.00	-	.	KN905923.1:subseq(1891841,100194)-genewise-prediction-1
KN905923.1:subseq(1891841,100194)	GeneWise	cds	54852	54708	0.00	-	2	KN905923.1:subseq(1891841,100194)-genewise-prediction-1
KN905923.1:subseq(1891841,100194)	GeneWise	intron	54707	52896	0.00	-	.	KN905923.1:subseq(1891841,100194)-genewise-prediction-1
KN905923.1:subseq(1891841,100194)	GeneWise	cds	52895	52710	0.00	-	1	KN905923.1:subseq(1891841,100194)-genewise-prediction-1
KN905923.1:subseq(1891841,100194)	GeneWise	intron	52709	51523	0.00	-	.	KN905923.1:subseq(1891841,100194)-genewise-prediction-1
KN905923.1:subseq(1891841,100194)	GeneWise	cds	51522	51366	0.00	-	1	KN905923.1:subseq(1891841,100194)-genewise-prediction-1
KN905923.1:subseq(1891841,100194)	GeneWise	intron	51365	50192	0.00	-	.	KN905923.1:subseq(1891841,100194)-genewise-prediction-1
KN905923.1:subseq(1891841,100194)	GeneWise	cds	50191	50009	0.00	-	0	KN905923.1:subseq(1891841,100194)-genewise-prediction-1
//
