
genewise output
Score 17.78 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SPP00002896_2.0   15 KNALSGEMVELKSLWKEKTTVLLFLRR                       
                     K  +SG++V +    K   T LLF RR                       
                     KFGISGKFVRISIRNKTNRTCLLFSRR                       
KN905853.1:subs30247 atgatgatgcatacaaaacatcttaac                       
                     atgtcgattgtctgaacagcgtttggg                       
                     acataaacaatgttcaatcataaccga                       


//
>KN905853.1:subseq(4800248,100077).pep
KFGISGKFVRISIRNKTNRTCLLFSRR
//
>KN905853.1:subseq(4800248,100077).[30247:30327].sp
AAATTCGGAATTTCAGGAAAATTCGTACGAATTTCGATTCGTAACAAAACAAATCGCACA
TGTCTATTATTCAGCAGGCGA
//
KN905853.1:subseq(4800248,100077)	GeneWise	match	30247	30327	17.78	+	.	KN905853.1:subseq(4800248,100077)-genewise-prediction-1
KN905853.1:subseq(4800248,100077)	GeneWise	cds	30247	30327	0.00	+	0	KN905853.1:subseq(4800248,100077)-genewise-prediction-1
//

genewise output
Score 295.81 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SPP00002896_2.0    1 MASVDLAKVGTILVKNALSGEM                          - 
                     M +VDLAK+G ILVKN ++GE+                            
                     MGNVDLAKLGAILVKNVVTGEV           -:S[agt]       Q 
KN905853.1:sub-57359 agaggcgacggacgaaggagggAGGTGTCTT  Intron 1   TAGTc 
                     tgatatcatgctttaattcgat  <2-----[57291:54395]-2> a 
                     gccgtgcgttccggacagcagg                          a 


SPP00002896_2.0   23 VELKSLWKEKTTVLLFLRRFGCQICRWIAKDIGKLKASCDAHQIRLVGI 
                      EL +LWK+ T+VL FLRRFGCQICRWIAKD+ +LK S DA+QIRL+GI 
                     CELNTLWKDNTSVLFFLRRFGCQICRWIAKDVSQLKESLDANQIRLIGI 
KN905853.1:sub-54390 tgtaattagaaagcttccatgtcatctagaggtccagttggacaccaga 
                     gatactgaaacgtttttggtggatgggtcaatcataactacaatgttgt 
                     taattggaccgcccccgagtccgtccgtgaccggcgaagtctgcgcttc 


SPP00002896_2.0   72 GPEEVGLKEFLEGNFFNG                          LYIDE 
                     GPE +GL+EF EGN+F G                          LY+DE 
                     GPETLGLQEFQEGNYFTG          E:E[gag]        LYLDE 
KN905853.1:sub-54243 gcgatgccgtcggattagGGTGAGTC  Intron 2   CAGAGttcgg 
                     gcactgtaataagaatcg <1-----[54188:52309]-1>  tataa 
                     cgatgtgagcagcttcaa                          atata 


SPP00002896_2.0   96 SKESYKTLGFK                          YSALSVIPAALG 
                     SK+SYK LGFK                          Y+ALS++PAALG 
                     SKQSYKELGFK           R:R[aga]       YNALSIVPAALG 
KN905853.1:sub-52291 tacatagcgtaAGGTGAGAA  Intron 3   CAGAtagctagcggcg 
                     caagaaatgta  <2-----[52256:50076]-2> aactcttccctg 
                     gggccggggta                          ttgttcccttgg 


SPP00002896_2.0  120 KKVRDIVTK                       ANADGVQGNFSGDLLQS 
                     KKVRDIVTK                       ANA GVQGNFSGDLLQS 
                     KKVRDIVTK                       ANAVGVQGNFSGDLLQS 
KN905853.1:sub-50038 aagcgagaaGTGAGAA  Intron 4   CAGgaggggcgataggccca 
                     aatgattca<0-----[50011:48475]-0>cactgtagatggattag 
                     ggcatttag                       ccttgtgctctatcagt 


SPP00002896_2.0  146 GGMLIVSK                          GEKVLLHFIQDSPGD 
                     GGMLIVSK                          GEKVLLHF+QDSPGD 
                     GGMLIVSK          G:G[ggt]        GEKVLLHFVQDSPGD 
KN905853.1:sub-48423 ggacagaaGGTAAGTA  Intron 5   TAGGTggagccctgcgtcgg 
                     ggttttga <1-----[48398:46575]-1>  gaatttattaaccga 
                     tggcccca                          agagccctcactacc 


SPP00002896_2.0  170 YVPLESIVQTLGITANVTESQR                            
                     YVPLE++V TLGITA+VT SQR                            
                     YVPLETLVTTLGITADVTASQR                            
KN905853.1:sub-46527 tgccgacgaacgaagggagacc                            
                     atctacttcctgtccatccgag                            
                     tttagcgcagggtactgcccgc                            


//
Making a S in phase 2 intron
Making a E in phase 1 intron
Making a R in phase 2 intron
Making a G in phase 1 intron
>KN905853.1:subseq(4800248,100077).pep
MGNVDLAKLGAILVKNVVTGEVSQCELNTLWKDNTSVLFFLRRFGCQICRWIAKDVSQLK
ESLDANQIRLIGIGPETLGLQEFQEGNYFTGELYLDESKQSYKELGFKRYNALSIVPAAL
GKKVRDIVTKANAVGVQGNFSGDLLQSGGMLIVSKGGEKVLLHFVQDSPGDYVPLETLVT
TLGITADVTASQR
//
>KN905853.1:subseq(4800248,100077).[57359:46460].sp
ATGGGCAACGTGGATCTGGCCAAGCTTGGTGCCATCCTGGTGAAAAACGTAGTGACCGGA
GAGGTGAGTCAATGTGAATTAAATACTTTGTGGAAAGACAACACGAGCGTCCTCTTCTTC
CTGCGAAGGTTTGGCTGCCAGATTTGCCGCTGGATTGCGAAAGACGTCTCGCAGCTCAAG
GAATCATTGGATGCCAATCAGATCCGGCTCATTGGTATCGGCCCGGAAACTTTGGGTCTG
CAAGAGTTCCAAGAGGGCAATTATTTCACAGGAGAGTTATATCTAGATGAATCGAAGCAG
AGCTACAAGGAGCTGGGGTTTAAAAGATATAATGCGCTTTCTATCGTCCCCGCTGCTCTG
GGGAAGAAGGTCCGAGATATTGTTACAAAGGCCAACGCTGTTGGGGTTCAGGGCAATTTC
AGTGGAGATCTCCTACAGAGTGGTGGGATGCTCATCGTCAGCAAAGGTGGAGAGAAAGTG
CTCCTCCACTTTGTCCAAGACTCTCCAGGCGACTATGTTCCTCTAGAGACCCTGGTCACA
ACGCTGGGGATTACAGCCGATGTGACCGCCAGCCAGCGC
//
KN905853.1:subseq(4800248,100077)	GeneWise	match	57359	46462	295.81	-	.	KN905853.1:subseq(4800248,100077)-genewise-prediction-1
KN905853.1:subseq(4800248,100077)	GeneWise	cds	57359	57292	0.00	-	0	KN905853.1:subseq(4800248,100077)-genewise-prediction-1
KN905853.1:subseq(4800248,100077)	GeneWise	intron	57291	54395	0.00	-	.	KN905853.1:subseq(4800248,100077)-genewise-prediction-1
KN905853.1:subseq(4800248,100077)	GeneWise	cds	54394	54189	0.00	-	1	KN905853.1:subseq(4800248,100077)-genewise-prediction-1
KN905853.1:subseq(4800248,100077)	GeneWise	intron	54188	52309	0.00	-	.	KN905853.1:subseq(4800248,100077)-genewise-prediction-1
KN905853.1:subseq(4800248,100077)	GeneWise	cds	52308	52257	0.00	-	2	KN905853.1:subseq(4800248,100077)-genewise-prediction-1
KN905853.1:subseq(4800248,100077)	GeneWise	intron	52256	50076	0.00	-	.	KN905853.1:subseq(4800248,100077)-genewise-prediction-1
KN905853.1:subseq(4800248,100077)	GeneWise	cds	50075	50012	0.00	-	1	KN905853.1:subseq(4800248,100077)-genewise-prediction-1
KN905853.1:subseq(4800248,100077)	GeneWise	intron	50011	48475	0.00	-	.	KN905853.1:subseq(4800248,100077)-genewise-prediction-1
KN905853.1:subseq(4800248,100077)	GeneWise	cds	48474	48399	0.00	-	0	KN905853.1:subseq(4800248,100077)-genewise-prediction-1
KN905853.1:subseq(4800248,100077)	GeneWise	intron	48398	46575	0.00	-	.	KN905853.1:subseq(4800248,100077)-genewise-prediction-1
KN905853.1:subseq(4800248,100077)	GeneWise	cds	46574	46462	0.00	-	2	KN905853.1:subseq(4800248,100077)-genewise-prediction-1
//
