------- SECIS element -- id:1 -- grade:B ----
 Chromosome = your_sequence Strand = - Positions = 47657 - 47582
 Found by:  Covels (score=7.39)
 Stem2 length = 11   Apical loop length = 9   Insertion in stem2 = 0, 1
 Free Energy = -10.3

         ..(((((((........(((((((((((((((................))))))))).)))))).........)))))))..
 model   uucggucaugcg-UuaAUGAcGgccuggcccuAAAcC-cuuuuuggggcgggccagg-cCuGAUGuuu-uuucaugaccggc
         ((({{{({(........{[[((((((((({((((.......-----))))})))))).)))]]}.....-...)})}}})))
 target  AUCACCAUUGUUuAAGAUGAAGAGUGCUGUUGGAAUUuGUA-----UUCAUUAGCACaUCUGAUACCAu-UUGAUUCUAGGU
                          ****            ^^                         ****                  

------- SECIS element -- id:2 -- grade:B ----
 Chromosome = your_sequence Strand = - Positions = 55784 - 55704
 Found by:  Covels (score=6.24)
 Stem2 length = 10   Apical loop length = 14   Insertion in stem2 = 0, 0
 Free Energy = -4.9

         ..(((((((........((.((((((((.(((((................))))).))))))))))..........)))))))..
 model   uucggucaugcg-UuaAUG-AcGgccug-gcccuAAAcC-cuuuuuggggcgggc-caggcCuGAUGuu-u-uuucaugaccggc
         ...(({(((........([.[{(((((({-(({((..............))}))-}))))))}]])......-...)))}))-..
 target  AUCAAUUUAAUGuGUCAUGcAAAUGCACc-CAUUCAAUCuUAGACCAUGGAUUG-uGUGCAUAGAGCUGaCu-UUCUGGUUU-CA
                          ** **             ^^                         ****                   

------- SECIS element -- id:3 -- grade:B ----
 Chromosome = your_sequence Strand = + Positions = 45679 - 45751
 Found by:  Covels (score=5.26)
 Stem2 length = 9   Apical loop length = 9   Insertion in stem2 = 0, 0
 Free Energy = -6.3

         ..(((((((........((((((((((.(((((...............))))).)))))))))).........)))))))..
 model   uucggucaugcg-UuaAUGAcGgccug-gcccuAAAcCcuuuuuggggcgggc-caggcCuGAUGuuu-uuucaugaccggc
         (((({((..........{[[{(({{(((((((......--------...)))))))}}))}]]}.....-.....))}))))
 target  UGGUUUUCAGGAaAAUGUGAUAAUUUUuUGUCUAAAGG--------AAUGAUGaAAUCUUUGAUGUGAc-CAUGUGAUACCA
                          ****            ^^^                        ****                  

------- SECIS element -- id:4 -- grade:B ----
 Chromosome = your_sequence Strand = + Positions = 44188 - 44265
 Found by:  Covels (score=8.08)
 Stem2 length = 12   Apical loop length = 12   Insertion in stem2 = 0, 0
 Free Energy = -11.9

         ..(((((((..........(((((((((((((((...............))))))))))))))).........)))))))...
 model   uucggucaugcg---UuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuuu-uuucaugaccg-gc
         ..--((((((.........([[(((((([((((((....-........))))))]))))))]]).....-.-)))))).....
 target  AU--UAGAAGCUcuuUGUAUGAAGGAAAAAGUUUGACCU-UCUCUCCACAAGCUGUUUUCUGAAUGAUc-C-CUUUUGUCuAA
                            ****             ^^                      ****                   

------- SECIS element -- id:5 -- grade:B ----
 Chromosome = your_sequence Strand = + Positions = 33458 - 33530
 Found by:  Infernal (score=13.09) Covels (score=12.06)
 Stem2 length = 9   Apical loop length = 10   Insertion in stem2 = 0, 0
 Free Energy = -8.5

         ..(((((((.......(((((((((((((((...............))))))))))))))).........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuuu-uuucaugaccggc
         ...(((([(.......([[((((({((([{(........-----..)}])))})))))]]).....-...)]))))...
 target  CUUUGUAAUAUCUAUAUGAAACCUCUGGGUGAAAUCAUC-----UGUCACCAUGGGUUGAGGGAUG-CACAGUAUAUUG
                         ****           ^^^                       ****