------- SECIS element -- id:1 -- grade:B ----
 Chromosome = your_sequence Strand = + Positions = 22662 - 22738
 Found by:  Covels (score=6.86)
 Stem2 length = 8   Apical loop length = 16   Insertion in stem2 = 0, 1
 Free Energy = -12.8   Free energy of apical portion = -0.7
 Type = 2

         ..(((((((........(((((((((((((((...............))))))).))))))))........)))))))....
 model   uucggucaugcg-UuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggcca-ggcCuGAUGuuuuuucaugaccg--gc
         ....({(((........([[(((((({(((....((.---...))....)))}).)))))]])..--....)))})......
 target  CCACACCUGGUUuAGGAAGAAGGCCAGCUUCUCAGGG---UCCCCAUCAAAGGUgGGCUUGAUGG--GAGGCAGCUCAaaUC
                          ****                                      ****                   

------- SECIS element -- id:2 -- grade:B ----
 Chromosome = your_sequence Strand = + Positions = 15217 - 15297
 Found by:  Covels (score=7.39)
 Stem2 length = 11   Apical loop length = 15   Insertion in stem2 = 0, 0
 Free Energy = -26.2
 Type = 1

         ..(((((((........((((((((((.(((((.................))))).))))))))))..........)))))))..
 model   uucggucaugcg-UuaAUGAcGgccug-gcccuAAAcC--cuuuuuggggcgggc-caggcCuGAUGuu-u-uuucaugaccggc
         ...((({[(((......([{((((((({-(((((...............)))))-})))))))}])......-)-))]})))...
 target  CAGUCCAGUCUGuCUCUUGGAGGGGGUg-UUCCAAAUUgcUCUCCAAGAUGGGA-gACUCCCUGAAGUGaUg-A-GAAAGGAACU
                          ****             ^^                          ****                   

------- SECIS element -- id:3 -- grade:A ----
 Chromosome = your_sequence Strand = + Positions = 50988 - 51065
 Found by:  Infernal (score=11.91) Covels (score=19.33)
 Stem2 length = 10   Apical loop length = 16   Insertion in stem2 = 1, 0
 Free Energy = -10.6   Free energy of apical portion = -1.0
 Type = 2

         ..(((((((...........((((((((((.((.(((................))))).))))))))))........)))))))..
 model   uucggucaugcg----UuaAUGAcGgccug-gc-ccuAAAcC-cuuuuuggggcgggc-caggcCuGAUGuuuuuucaugaccggc
         .(({(((((...........([[[(((((((--.(((....(((...)))...)))--)))))))]]])----....)))))})).
 target  UCUGGUAUAGCAUCAUGGUAUGAAUUGCCCU--AUGUAAACCCAUUUUGGAAAGCA--GGGGUGAGGAA----CAUGUAUAUGAGC
                             ****             ^^^                         ****                 

------- SECIS element -- id:4 -- grade:C ----
 Chromosome = your_sequence Strand = - Positions = 24692 - 24622
 Found by:  Infernal (score=12.61) Covels (score=3.25)
 Stem2 length = 8   Apical loop length = 14   Insertion in stem2 = 3, 1
 Free Energy = -20.2   Free energy of apical portion = -6.7
 Type = 2

         ..(((((((.......((((((((((((.....................))))))))))))........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccgAAAcCcuuuuuggggugggccaggcCuGAUGuuuuuucaugaccggc
         .((((((((.--....([[[(((({(((...(((((......))))).-)))}))))]]])----....)))))))).
 target  UGCUGUGGGC--UAGAUGAAGGCUUACCCAGGCCUGAUCUGCCAGGUA-GGUUAGCUGGAG----UCUCUUCAUGGUU
                         ****            ^^                       ****