------- SECIS element -- id:1 -- grade:C ----
 Chromosome = your_sequence Strand = - Positions = 101528 - 101452
 Found by:  Covels (score=6.61)
 Stem2 length = 9   Apical loop length = 13   Insertion in stem2 = 2, 0
 Free Energy = -9.5
 Type = 1

         ..(((((((........((((((((((((..(((...............)))))))))))))))...........)))))))..
 model   uucggucaugcg-UuaAUGAcGgccuggc--ccuAAAcCcuuuuuggggcgggccaggcCuGAUGuu--u-uuucaugaccggc
         ..(((((((((......{[[{..((((((..(((.....--........)))))))))--}]]}.......-.)))))))--))
 target  UGGAAAGCUAGCaAACAUGAUCUUUCUGAagGCUAAAAA--UAUUCUAAGGCUCAGAA--UGAUGUUguUc-ACUAGCUU--UC
                          ****             ^^^                       ****                    

------- SECIS element -- id:2 -- grade:C ----
 Chromosome = your_sequence Strand = - Positions = 28687 - 28598
 Found by:  Infernal (score=10.63) Covels (score=1.69)
 Stem2 length = 8   Apical loop length = 26   Insertion in stem2 = 4, 2
 Free Energy = -14.5   Free energy of apical portion = -8.0
 Type = 2

         ..(((((((.........(((((((((((..................................))))))))))).........)))))))..
 model   uucggucaugcg--UuaAUGAcGgccuggcccgAAAcCcuuuuugggguggg-----------ccaggcCuGAUGuuu-uuucaugaccggc
         ..({(((((.........([[{(((((((....((((((...(((...)))...)))).))..)))))))}]]).....-.-.)))))})..
 target  GGGAUUUGUGUAACUCAAUGAAGCUAUGAGCUAUGCCAUGCAGGGCCACCCAAGAUGGACAGGUCAUAGUAGAGAGUUC-U-GACAAAAUGU
                           ****             ^^                                 ****                  

------- SECIS element -- id:3 -- grade:B ----
 Chromosome = your_sequence Strand = + Positions = 55042 - 55109
 Found by:  Infernal (score=10.92) Covels (score=7.81)
 Stem2 length = 9   Apical loop length = 9   Insertion in stem2 = 0, 0
 Free Energy = -6.6
 Type = 1

         ..(((((((.......(((((((((((((((...............))))))))))))))).........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuuu-uuucaugaccggc
         ..((((({(.--....([[{({((((((((......--------...))))))))})}]]).....-...)})))))..
 target  UCAAGAGAUG--UAGAGGAUGAUUCCUGGGCAAAGC--------AACUCUAGGGGCCUGAUGCCAC-AUAACCUUUUUC
                         ****           ^^^                       ****                  

------- SECIS element -- id:4 -- grade:B ----
 Chromosome = your_sequence Strand = + Positions = 48302 - 48372
 Found by:  Infernal (score=14.55) Covels (score=13.75)
 Stem2 length = 8   Apical loop length = 15   Insertion in stem2 = 0, 0
 Free Energy = -17.9
 Type = 1

         ..(((((((.......(((((((((((((((...............)))))))))))))))........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc
         ..((((((((((....{[[{(({((((({(......--.........)})))))}))}]]}----))-))))))))..
 target  GGGGGAGGAGAUGGAAUGACUUCCAGGCUACAAGUU--GCUAAUUCCUUGCCUGAAACGAU----AU-CUCCUUUUGA
                         ****           ^^                        ****                 

------- SECIS element -- id:5 -- grade:A ----
 Chromosome = your_sequence Strand = + Positions = 53306 - 53387
 Found by:  Infernal (score=30.64) Covels (score=21.32)
 Stem2 length = 10   Apical loop length = 19   Insertion in stem2 = 0, 0
 Free Energy = -25.4   Free energy of apical portion = -2.1
 Type = 2

         ..(((((((.......(((((((((((((((...................))))))))))))))).........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcC----cuuuuuggggcgggccaggcCuGAUGuuu-uuucaugaccggc
         ..([(((((.......([[[({(((((((((....(((.......)))..)))))))))})]]]).....-...)))))])..
 target  UGUAUGUGUGCUUAAAUGAAGAGUGUAGCCUAAACCCAUUUUUCUUGGAAAGGCUGCACCCGGAAGAAAC-UGAGCGCAGAAU
                         ****           ^^^                           ****