------- SECIS element -- id:1 -- grade:B ----
 Chromosome = your_sequence Strand = - Positions = 11783 - 11706
 Found by:  Covels (score=12.4)
 Stem2 length = 9   Apical loop length = 16   Insertion in stem2 = 0, 0
 Free Energy = -6.2
 Type = 1

         ..(((((((........(((((((((((((((...............))))))))))))))).........)))))))...
 model   uucggucaugcg-UuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuuu-uuucaugaccg-gc
         ..(({(((.........{[[((({(((((((......-..........)))))))})))]]}.....-.-..)))}))...
 target  AUUUUGAGCAAAaUAAAUGACAAUUUAAAGUUAAAAA-CAAACCACCUAUUUUAAUUUGGACAAUUu-G-CCCUCUAGcUU
                          ****           ^^^                       ****                   

------- SECIS element -- id:2 -- grade:C ----
 Chromosome = your_sequence Strand = + Positions = 70777 - 70857
 Found by:  Covels (score=6.35)
 Stem2 length = 7   Apical loop length = 16   Insertion in stem2 = 1, 0
 Free Energy = -10.9   Free energy of apical portion = -0.2
 Type = 2

         ..(((((((........((((((((((((.(((................))))))))))))))).........)))))))..
 model   uucggucaugcg-UuaAUGAcGgccuggc-ccuAAAcC-cuuuuuggggcgggccaggcCuGAUGuuu-uuucaugaccggc
         .(([(((((((((((..{[[[((({{{((.{((...((((...))))..))}))}}})))]]]}..)))-))))))))])).
 target  CAAAGGUGUUUUcCAGAUGAAGGUUUUAUuUAGCAAGAgUCCUGCUUCAUUUAUUUUAUUGGAUGGUGg-GAAACACUGUUA
                          ****             ^^                        ****                  

------- SECIS element -- id:3 -- grade:C ----
 Chromosome = your_sequence Strand = + Positions = 52049 - 52126
 Found by:  Covels (score=6.25)
 Stem2 length = 9   Apical loop length = 14   Insertion in stem2 = 0, 2
 Free Energy = -9.9   Free energy of apical portion = -3.3
 Type = 2

         ..(((((((........(((((((((((((((....................)))))))))))))))..........)))))))..
 model   uucggucaugcg-UuaAUGAcGgccuggcccuAAAcC-----cuuuuuggggcgggccaggcCuGAUGuu-u-uuucaugaccggc
         ...({{({((.......([[{(((({(((((------((((......)))))..))))}))))}]])......-.-))})}})...
 target  GACACCCCUGGUcUAGAUGAUGAUACUAGCU------aggacUAAAAUCCUGAUGCUGCUGUCUGAGUAAaUg-A-UAUGCUUUAU
                          ****                                          ****                   

------- SECIS element -- id:4 -- grade:C ----
 Chromosome = your_sequence Strand = - Positions = 36193 - 36107
 Found by:  Infernal (score=10.07) Covels (score=2.98)
 Stem2 length = 8   Apical loop length = 26   Insertion in stem2 = 4, 2
 Free Energy = -9.0   Free energy of apical portion = -7.6
 Type = 2

         ..(((((((.......(((((((((((..................................)))))))))))..........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccgAAAcCcuuuuugggguggg-----------ccaggcCuGAUGuu-u-uuucaugaccggc
         (((((({{(---....([[{(((((((....((((((...(((...)))...)))).))..)))))))}]])......-...)}}))))))
 target  UUGUGUAAU---UCAAUGAAGUUAUGAGCUAUGCCGUGCAGGGCCACCCAAGAUGGACAGGUCAUAGCAGAGAGUUCU-GACAAAACGUGA
                         ****             ^^                                 ****                   

------- SECIS element -- id:5 -- grade:B ----
 Chromosome = your_sequence Strand = - Positions = 23432 - 23354
 Found by:  Infernal (score=13.96) Covels (score=13.99)
 Stem2 length = 8   Apical loop length = 15   Insertion in stem2 = 0, 0
 Free Energy = -8.0   Free energy of apical portion = -1.3
 Type = 2

         ..(((((((.............(((((((((((((((...............)))))))))))))))........)))))))..
 model   uucggucaugcg------UuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc
         .((((({((.............{[[[((({({((((.....(--(....))..))))})})))]]]}..--..-.))}))))).
 target  GUACUAGUAGUGCCCGAAAGAAUGAAGCGACUGGGCCAAAGC--CGAAAGGACGCUCCGCUGUGGAUGU--AU-AUGGUGGUGA
                               ****           ^^^                       ****                 

------- SECIS element -- id:6 -- grade:B ----
 Chromosome = your_sequence Strand = - Positions = 35946 - 35877
 Found by:  Infernal (score=16.34) Covels (score=14.69)
 Stem2 length = 9   Apical loop length = 15   Insertion in stem2 = 0, 0
 Free Energy = -15.6   Free energy of apical portion = -1.3
 Type = 2

         ..(((((((.......(((((((((((((((...............)))))))))))))))........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc
         ..(((({[(---....{[[[((({((((((.....(--(....))..))))))})))]]]}..--..-.)]}))))..
 target  GCGCCAGAA---AGAAUGAAGCAACUGGGCCAACGC--CGAAAGGACGCUCAGCUGUGGAUGU--GU-CUGGUGGUAA
                         ****           ^^                        ****