------- SECIS element -- id:1 -- grade:B ----
 Chromosome = your_sequence Strand = - Positions = 13725 - 13650
 Found by:  Covels (score=6.83)
 Stem2 length = 9   Apical loop length = 10   Insertion in stem2 = 0, 2
 Free Energy = -9.1
 Type = 1

         ..(((((((........(((((((((((((((...............)))))))..)))))))).........)))))))..
 model   uucggucaugcg-UuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggcca--ggcCuGAUGuuu-uuucaugaccggc
         (((([(({(((......([[(({({(((((((........-----..)))))))..})}))]]).....-.)))}))]))))
 target  UUCUGGGUGGGGcAAGUUGAAGAGUAGUUGUUAACUUCCU-----CAGGCAACUcuUUCCUGAACAGCa-ACUUUUCAGGAA
                          ****           ^^                          ****                  

------- SECIS element -- id:2 -- grade:C ----
 Chromosome = your_sequence Strand = - Positions = 17025 - 16943
 Found by:  Covels (score=5.14)
 Stem2 length = 9   Apical loop length = 17   Insertion in stem2 = 0, 0
 Free Energy = -9.1   Free energy of apical portion = -2.3
 Type = 2

         ..(((((((........(((((((((((((((...................))))))))))))))).........)))))))...
 model   uucggucaugcg-UuaAUGAcGgccuggcccuAAAcC----cuuuuuggggcgggccaggcCuGAUGuuu-uuucaugaccg-gc
         ...((............([[[.((((({(({((...(((((....)))))))}))})))))-]]]).....-.......))....
 target  AAAGGAAAAUGAgCGAAUGAAAACAGAUAAUGGAUGUucuuGGAAAAGAACCUUUUUCUGU-GGAAAGUUa-UUUAAGGCUGcCA
                          ****                                         ****                   

------- SECIS element -- id:3 -- grade:B ----
 Chromosome = your_sequence Strand = - Positions = 10652 - 10569
 Found by:  Infernal (score=10.17) Covels (score=8.47)
 Stem2 length = 10   Apical loop length = 21   Insertion in stem2 = 0, 1
 Free Energy = -13.1   Free energy of apical portion = -2.1
 Type = 2

         ..(((((((........(((((((((((((((.........................))))))).))))))))..........)))))))..
 model   uucggucaugcg-UuaAUGAcGgccuggcccuAAAcC----------cuuuuuggggcgggcca-ggcCuGAUGuu-u-uuucaugaccggc
         ..((((((((.......([[{((((((((((------.....((((........))))))))).)))))}]])......-.-))))))))..
 target  UCAGAGUAAGUGUACUAUGAUGAUACAGUGU------UUCUUUUCCCCUUAGAUGGAAACACUGGUGUUUGAACCAGCU-U-UUUGCUUUUG
                          ****                                                ****                   

------- SECIS element -- id:4 -- grade:B ----
 Chromosome = your_sequence Strand = + Positions = 28296 - 28340
 Found by:  Infernal (score=11.83) Covels (score=13.23)
 Stem2 length = 11   Apical loop length = 17   Insertion in stem2 = 0, 0
 Free Energy = -17.7   Free energy of apical portion = -1.2
 Type = 2

         ..(((((((.......(((((((((((((((.................)))))))))))))))........)))))))..
 model   uccgggcaugcgUuaAUGAcGgccuggcccuAAAcC--cuuuuuggggcgggccaggcCuGAUGuuuuuucaugcccggc
         -----------------[[{(((((((((((...(((.....)))...)))))))))))}]]------------------
 target  -----------------GAUGGGCGAACUUUCCAGGACUGUUUCCCGAAGAGUUCGCCCUGA------------------
                          ***           ^^                          ***                  

------- SECIS element -- id:5 -- grade:A ----
 Chromosome = your_sequence Strand = - Positions = 16689 - 16617
 Found by:  Infernal (score=28.35) Covels (score=22.12)
 Stem2 length = 10   Apical loop length = 12   Insertion in stem2 = 0, 0
 Free Energy = -19.2
 Type = 1

         ..(((((((........(((((((((((((((...............))))))))))))))).........)))))))..
 model   uucggucaugcg-UuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuuu-uuucaugaccggc
         (({((({(((((.....{[[(((((((((((.........-----...)))))))))))]]}....)-)-)))})))}))
 target  UGCUCAUCUGUUCUUUGUGAAGGUCUGAUCUUAAAUCAAG-----GAUGGGUCAGGCUUGAUUUCUG-A-CAGUUGAUUG
                          ****           ^^^                       ****